[Bioc-devel] Package update not showing on Bioc 3.6 webpage

Wed Nov 1 22:06:45 CET 2017

Hi Kushal,

Can you please try,

	ssh -T git at git.bioconductor.org -v

Are you using the correct private key to your corresponding public key on our machine?

If not, please check the FAQ section bioconductor.org/developers/how-to/git/faq/ point#15. You can set up a config file to use the correct private key.

A snippet of your public key on our machine is,

ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAACAQC8EgObkc/OI4nc8NE0sL4COb6uNaBIURhJoSyisz8i8/KWum0xFhav7ouDpMoZz0lgnlRaIYIRquJx0R44ojDcsN45TBR8Rna4PNBscVJEsbonD0k3wi2OBySgwxTzL5aZl99HzuAzthAPzFuskZDHahws9sPUtWMxioI6D5ZktVOb/QJbDJdFHFPXcd8l90wRJN0eGJXX9excJBDU57ufEgDBx9vGv85GTwJjP4UQYLyjDIap2CbrdC+7nJ95fa7YcNUj2znVFcrNnkW9

Best,

Nitesh 

> On Nov 1, 2017, at 2:23 PM, kushal kumar dey <kshldey at gmail.com> wrote:
> 
> Hi Herve,
> 
> Thanks for clarifying on the matter. I followed your instructions and did *git
> cherry-pick* to make the following changes
> 
> - fix a bug in one of the functions
> - add a citation
> - fix the readme
> 
> I bumped the version number from 1.4.0 to 1.4.1 and tried to push to the
> release branch, but I when I run the command,
> 
> git push upstream RELEASE_3_6
> 
> I meet with the following error
> 
> *fatal: remote error: FATAL: W any packages/CountClust nobody DENIED by
> fallthru*
> 
> *(or you mis-spelled the reponame)*
> 
> 
> You can check the branch I want to push on my Github
> 
> 
> 
> *https://github.com/kkdey/CountClust/tree/RELEASE_3_6
> <https://github.com/kkdey/CountClust/tree/RELEASE_3_6>*
> 
> 
> This is my output from *git remote -v *
> 
> *origin https://github.com/kkdey/CountClust.git
> <https://github.com/kkdey/CountClust.git> (fetch)*
> 
> *origin https://github.com/kkdey/CountClust.git
> <https://github.com/kkdey/CountClust.git> (push)*
> 
> *upstream https://git.bioconductor.org/packages/CountClust
> <https://git.bioconductor.org/packages/CountClust> (fetch)*
> 
> *upstream https://git.bioconductor.org/packages/CountClust
> <https://git.bioconductor.org/packages/CountClust> (push)*
> 
> 
> Can you please let me know what I am doing wrong here and how I can update
> the release version?
> 
> 
> Thank you so much!
> 
> 
> Kushal
> 
> 
> 
> 
> 
> On 30 October 2017 at 17:50, Hervé Pagès <hpages at fredhutch.org> wrote:
> 
>> Hi Kushal,
>> 
>> If you push changes without bumping the version of your package,
>> the update won't propagate.
>> 
>> You only bumped the version to 1.5.1 today so you need to wait
>> about 24 hours before seeing this reflected on the landing page
>> for CountClust.
>> 
>> Also please note that you did the version bump plus a few other
>> commits (6 commits in total) in master today **after** we created
>> the RELEASE_3_6 branch so these changes will only propagate to
>> BioC 3.7 (the new devel version of BioC, starting tomorrow).
>> If you want these changes to also propagate to the BioC 3.6 release
>> you'll need to push them to the RELEASE_3_6 branch. This is
>> typically done with 'git cherry-pick' as documented here:
>> 
>> 
>> https://bioconductor.org/developers/how-to/git/bug-fix-in-
>> release-and-devel/
>> 
>> Cheers,
>> H.
>> 
>> 
>> On 10/30/2017 02:41 PM, kushal kumar dey wrote:
>> 
>>> Hi all,
>>> 
>>> I am the author and maintainer of the CountClust package. I recently
>>> submitted an update (version 1.5.1) to the package through
>>> Bioconductor Git  and I can access this updated version when I clone the
>>> source repository
>>> 
>>> git clone https://urldefense.proofpoint.com/v2/url?u=https-3A__git.bio
>>> conductor.org_packages_CountClust&d=DwICAg&c=eRAMFD45gAfqt84
>>> VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S
>>> 8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=YBM0DldFbCkrEBnHaB
>>> n5X8-jb1yhm_GmSUWL6SIGLmo&e=
>>> 
>>> However, the updated version is not available in the official Bioconductor
>>> 3.6 page, which still shows the version 1.3.0.
>>> 
>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bio
>>> conductor.org_packages_3.6_bioc_html_CountClust.html&d=DwICA
>>> g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvS
>>> XAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&
>>> s=UfPX4T5l4JBfXBumCcQ-5YOm59i_xfX2OEILrQ3I2u0&e=
>>> 
>>> Can you please let me know if the page has not been updated for the
>>> packages yet or if I would need to do something at my end to update the
>>> version reported on the page?
>>> 
>>> Thanks so much
>>> 
>>> 
>> --
>> Hervé Pagès
>> 
>> Program in Computational Biology
>> Division of Public Health Sciences
>> Fred Hutchinson Cancer Research Ce
>> <https://maps.google.com/?q=n+Cancer+Research+Ce&entry=gmail&source=g>nter
>> 1100 Fairview Ave. N, M1-B514
>> P.O. Box 19024
>> Seattle, WA 98109-1024
>> 
>> E-mail: hpages at fredhutch.org
>> Phone:  (206) 667-5791
>> Fax:    (206) 667-1319
>> 
> 
> 
> 
> -- 
> Kushal K. Dey
> Graduate Student
> 5 th Year, Department of Statistics
> University of Chicago
> Contact: +1 312-709-0680 | kkdey at uchicago.edu
> 
> 	[[alternative HTML version deleted]]
> 
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