[Bioc-devel] adding methods to BiocGenerics

Stephanie M. Gogarten sdmorris at u.washington.edu
Fri May 19 17:39:26 CEST 2017


Dear Core Team,

What do you think about adding the following generics to BiocGenerics?

colData
rowRanges
ref
alt
qual
filt
header
fixed
info
geno

They are currently defined by both 
VariantAnnotation/SummarizedExperiment and SeqArray. Given the 
increasingly widespread use of VCF files, it seems likely that other 
packages may want to use them in future also.

Stephanie



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