[Bioc-devel] ERROR from SVN: URL access forbidden for unknown reason
Martin Morgan
martin.morgan at roswellpark.org
Sat May 6 03:35:35 CEST 2017
On 05/04/2017 12:25 PM, Lluís Revilla wrote:
> Hi,
>
> I am trying to push some changes from my machine to the svn repository of
> Bioconductor.
>
> Since the start of the package I've been using git, so I have prior history
> before submitting to Bioconductor. And I made some other commits after the
> acceptance in Bioconductor, see the attached screenshot of history. The
> version accepted in Bioconductor svn repository is tagged with v1.0.0.
>
> I would like to push some changes from my local repository to the
> Bioconductor svn repository but I keep having problems. I have picked
> several commits as recommended by the guide (
> https://www.bioconductor.org/developers/how-to/git-mirrors/). I do
> everything as in the guide but the git svn dcommit of line 19
> https://www.bioconductor.org/developers/how-to/git-mirrors/#n19 I end up
> with the same error:
> $ git checkout
> Your branch is ahead of 'bioc/master' by 16 commits.
> (use "git push" to publish your local commits)
> $ git svn info
> Path: .
> URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor
> Repository Root: https://hedgehog.fhcrc.org/bioconductor
> Repository UUID: bc3139a8-67e5-0310-9ffc-ced21a209358
> Revision: 129129
> Node Kind: directory
> Schedule: normal
> Last Changed Author: hpages at fhcrc.org
> Last Changed Rev: 129129
> Last Changed Date: 2017-04-24 21:50:57 +0200 (lun, 24 abr 2017)
>
> $ git svn rebase
> Current branch devel is up to date.
> $ git svn dcommit
> Committing to
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor ...
> g
> ERROR from SVN:
> URL access forbidden for unknown reason: POST of '/bioconductor/!svn/me':
The user l.revilla was given read access to the repository, but not
write access to BioCor. l.revilla now has write access to BioCor, so
that part of the problem should be solved.
My apologies for not noticing the permissions problem earlier; I had
interpreted the problem as git / svn interface.
Martin
> 403 Forbidden (https://hedgehog.fhcrc.org)
> W: a2f573ac06c0ba1f84d76313cfd468001f885247 and refs/remotes/git-svn-devel
> differ, using rebase:
> :100755 100644 d140921a7f64d242d69c11b8207d7c325a0d79b7
> d140921a7f64d242d69c11b8207d7c325a0d79b7 M .Rbuildignore
> :100755 100644 ed93d433bb14fc1d39dbb0453f0a77b92388f541
> ed93d433bb14fc1d39dbb0453f0a77b92388f541 M .travis.yml
> :100755 100644 c3f283684016dfb5779e6b460abfae8a0f096d28
> c3f283684016dfb5779e6b460abfae8a0f096d28 M BioCor.Rproj
> :100755 100644 510d6461eaa2ca4adb751cc1cb98a9bda5daba03
> 510d6461eaa2ca4adb751cc1cb98a9bda5daba03 M DESCRIPTION
> :100755 100644 9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc
> 9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc M LICENSE
> :100755 100644 8def1515bda70d7fdedf85eba89e8d1b5e6fccaa
> 8def1515bda70d7fdedf85eba89e8d1b5e6fccaa M NAMESPACE
> :100755 100644 5fda75572488043df7fb8c0b7e47d24821cf57f1
> 5fda75572488043df7fb8c0b7e47d24821cf57f1 M NEWS
> :040000 040000 42871e2b6cbce28bf2e0d54b6361170105b2848e
> c8d818d0ed3196d391f914996dd26354004df665 M R
> :100755 100644 0a64c7757d1c269af38d2d0e7796352927fa45da
> 0a64c7757d1c269af38d2d0e7796352927fa45da M README.md
> :100644 000000 8e2bef6bf185b9bbc9da7e500bdb394396ccad99
> 0000000000000000000000000000000000000000 D bio_cor.R
> :040000 040000 0b135855576605015e2325411b42c735a881fcae
> 378a5b97d68ecfa7430bebdaba2c5b6540e6051e M man
> :040000 040000 4b15780e11519649aeabcb77a255585bdb68d778
> 594d15d7838d2096afda7b5697242e48bb7fce42 M tests
> :040000 040000 2f5b1ca4c1cac07a33f72d110bb14877220774a5
> 6be3cd535391595a962f610dad103e88b2fc32bd M vignettes
> Current branch devel is up to date.
> ERROR: Not all changes have been committed into SVN, however the committed
> ones (if any) seem to be successfully integrated into the working tree.
> Please see the above messages for details.
>
> $ git svn dcommit --username XXXX
> Committing to
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor ...
>
> ERROR from SVN:
> URL access forbidden for unknown reason: POST of '/bioconductor/!svn/me':
> 403 Forbidden (https://hedgehog.fhcrc.org)
> W: a2f573ac06c0ba1f84d76313cfd468001f885247 and refs/remotes/git-svn-devel
> differ, using rebase:
> :100755 100644 d140921a7f64d242d69c11b8207d7c325a0d79b7
> d140921a7f64d242d69c11b8207d7c325a0d79b7 M .Rbuildignore
> :100755 100644 ed93d433bb14fc1d39dbb0453f0a77b92388f541
> ed93d433bb14fc1d39dbb0453f0a77b92388f541 M .travis.yml
> :100755 100644 c3f283684016dfb5779e6b460abfae8a0f096d28
> c3f283684016dfb5779e6b460abfae8a0f096d28 M BioCor.Rproj
> :100755 100644 510d6461eaa2ca4adb751cc1cb98a9bda5daba03
> 510d6461eaa2ca4adb751cc1cb98a9bda5daba03 M DESCRIPTION
> :100755 100644 9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc
> 9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc M LICENSE
> :100755 100644 8def1515bda70d7fdedf85eba89e8d1b5e6fccaa
> 8def1515bda70d7fdedf85eba89e8d1b5e6fccaa M NAMESPACE
> :100755 100644 5fda75572488043df7fb8c0b7e47d24821cf57f1
> 5fda75572488043df7fb8c0b7e47d24821cf57f1 M NEWS
> :040000 040000 42871e2b6cbce28bf2e0d54b6361170105b2848e
> c8d818d0ed3196d391f914996dd26354004df665 M R
> :100755 100644 0a64c7757d1c269af38d2d0e7796352927fa45da
> 0a64c7757d1c269af38d2d0e7796352927fa45da M README.md
> :100644 000000 8e2bef6bf185b9bbc9da7e500bdb394396ccad99
> 0000000000000000000000000000000000000000 D bio_cor.R
> :040000 040000 0b135855576605015e2325411b42c735a881fcae
> 378a5b97d68ecfa7430bebdaba2c5b6540e6051e M man
> :040000 040000 4b15780e11519649aeabcb77a255585bdb68d778
> 594d15d7838d2096afda7b5697242e48bb7fce42 M tests
> :040000 040000 2f5b1ca4c1cac07a33f72d110bb14877220774a5
> 6be3cd535391595a962f610dad103e88b2fc32bd M vignettes
> Current branch devel is up to date.
> ERROR: Not all changes have been committed into SVN, however the committed
> ones (if any) seem to be successfully integrated into the working tree.
> Please see the above messages for details.
>
> See one of my previous attempts in
> https://stat.ethz.ch/pipermail/bioc-devel/2017-April/010841.html. I rewrote
> the history of commits to avoid having non-linear history and still the
> same error. In a similar situation (
> https://stat.ethz.ch/pipermail/bioc-devel/2016-April/009108.html) it was
> suggested to seed the password but it hasn't worked:
> $ svn log --limit 1 --username XXX
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor
> ------------------------------------------------------------------------
> r129129 | hpages at fhcrc.org | 2017-04-24 21:50:57 +0200 (lun, 24 abr 2017) |
> 1 line
>
> bump x.y.z versions to odd y after creation of 3_5 branch
> ------------------------------------------------------------------------
>
> I wasn't prompted with the password, so I assume that I have the rights to
> write in the repository.
> Just to make sure I have correctly set up the git repository here is the
> configuration:
>
> $git config --local -l
> core.repositoryformatversion=0
> core.filemode=true
> core.bare=false
> core.logallrefupdates=true
> remote.origin.url=https://github.com/llrs/BioCor.git
> remote.origin.fetch=+refs/heads/*:refs/remotes/origin/*
> branch.master.remote=origin
> branch.master.merge=refs/heads/master
> remote.bioc.url=https://github.com/Bioconductor-mirror/BioCor.git
> remote.bioc.fetch=+refs/heads/*:refs/remotes/bioc/*
> svn-remote.devel.url=
> https://hedgehog.fhcrc.org/bioconductor//trunk/madman/Rpacks/BioCor
> svn-remote.devel.fetch=:refs/remotes/git-svn-devel
> svn-remote.release-3.5.url=
> https://hedgehog.fhcrc.org/bioconductor//branches/RELEASE_3_5/madman/Rpacks/BioCor
> svn-remote.release-3.5.fetch=:refs/remotes/git-svn-release-3.5
> branch.release-3.5.remote=bioc
> branch.release-3.5.merge=refs/heads/release-3.5
> branch.devel.remote=bioc
> branch.devel.merge=refs/heads/master
>
> I don't understand where does the problem come from. Any guidance about how
> to solve it, or how to solve the conflicts is welcome.
>
> Thanks,
>
> Lluís
>
>
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>
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