[Bioc-devel] ERROR from SVN: URL access forbidden for unknown reason
Lluís Revilla
lluis.revilla at gmail.com
Thu May 4 18:25:04 CEST 2017
Hi,
I am trying to push some changes from my machine to the svn repository of
Bioconductor.
Since the start of the package I've been using git, so I have prior history
before submitting to Bioconductor. And I made some other commits after the
acceptance in Bioconductor, see the attached screenshot of history. The
version accepted in Bioconductor svn repository is tagged with v1.0.0.
I would like to push some changes from my local repository to the
Bioconductor svn repository but I keep having problems. I have picked
several commits as recommended by the guide (
https://www.bioconductor.org/developers/how-to/git-mirrors/). I do
everything as in the guide but the git svn dcommit of line 19
https://www.bioconductor.org/developers/how-to/git-mirrors/#n19 I end up
with the same error:
$ git checkout
Your branch is ahead of 'bioc/master' by 16 commits.
(use "git push" to publish your local commits)
$ git svn info
Path: .
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor
Repository Root: https://hedgehog.fhcrc.org/bioconductor
Repository UUID: bc3139a8-67e5-0310-9ffc-ced21a209358
Revision: 129129
Node Kind: directory
Schedule: normal
Last Changed Author: hpages at fhcrc.org
Last Changed Rev: 129129
Last Changed Date: 2017-04-24 21:50:57 +0200 (lun, 24 abr 2017)
$ git svn rebase
Current branch devel is up to date.
$ git svn dcommit
Committing to
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor ...
g
ERROR from SVN:
URL access forbidden for unknown reason: POST of '/bioconductor/!svn/me':
403 Forbidden (https://hedgehog.fhcrc.org)
W: a2f573ac06c0ba1f84d76313cfd468001f885247 and refs/remotes/git-svn-devel
differ, using rebase:
:100755 100644 d140921a7f64d242d69c11b8207d7c325a0d79b7
d140921a7f64d242d69c11b8207d7c325a0d79b7 M .Rbuildignore
:100755 100644 ed93d433bb14fc1d39dbb0453f0a77b92388f541
ed93d433bb14fc1d39dbb0453f0a77b92388f541 M .travis.yml
:100755 100644 c3f283684016dfb5779e6b460abfae8a0f096d28
c3f283684016dfb5779e6b460abfae8a0f096d28 M BioCor.Rproj
:100755 100644 510d6461eaa2ca4adb751cc1cb98a9bda5daba03
510d6461eaa2ca4adb751cc1cb98a9bda5daba03 M DESCRIPTION
:100755 100644 9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc
9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc M LICENSE
:100755 100644 8def1515bda70d7fdedf85eba89e8d1b5e6fccaa
8def1515bda70d7fdedf85eba89e8d1b5e6fccaa M NAMESPACE
:100755 100644 5fda75572488043df7fb8c0b7e47d24821cf57f1
5fda75572488043df7fb8c0b7e47d24821cf57f1 M NEWS
:040000 040000 42871e2b6cbce28bf2e0d54b6361170105b2848e
c8d818d0ed3196d391f914996dd26354004df665 M R
:100755 100644 0a64c7757d1c269af38d2d0e7796352927fa45da
0a64c7757d1c269af38d2d0e7796352927fa45da M README.md
:100644 000000 8e2bef6bf185b9bbc9da7e500bdb394396ccad99
0000000000000000000000000000000000000000 D bio_cor.R
:040000 040000 0b135855576605015e2325411b42c735a881fcae
378a5b97d68ecfa7430bebdaba2c5b6540e6051e M man
:040000 040000 4b15780e11519649aeabcb77a255585bdb68d778
594d15d7838d2096afda7b5697242e48bb7fce42 M tests
:040000 040000 2f5b1ca4c1cac07a33f72d110bb14877220774a5
6be3cd535391595a962f610dad103e88b2fc32bd M vignettes
Current branch devel is up to date.
ERROR: Not all changes have been committed into SVN, however the committed
ones (if any) seem to be successfully integrated into the working tree.
Please see the above messages for details.
$ git svn dcommit --username XXXX
Committing to
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor ...
ERROR from SVN:
URL access forbidden for unknown reason: POST of '/bioconductor/!svn/me':
403 Forbidden (https://hedgehog.fhcrc.org)
W: a2f573ac06c0ba1f84d76313cfd468001f885247 and refs/remotes/git-svn-devel
differ, using rebase:
:100755 100644 d140921a7f64d242d69c11b8207d7c325a0d79b7
d140921a7f64d242d69c11b8207d7c325a0d79b7 M .Rbuildignore
:100755 100644 ed93d433bb14fc1d39dbb0453f0a77b92388f541
ed93d433bb14fc1d39dbb0453f0a77b92388f541 M .travis.yml
:100755 100644 c3f283684016dfb5779e6b460abfae8a0f096d28
c3f283684016dfb5779e6b460abfae8a0f096d28 M BioCor.Rproj
:100755 100644 510d6461eaa2ca4adb751cc1cb98a9bda5daba03
510d6461eaa2ca4adb751cc1cb98a9bda5daba03 M DESCRIPTION
:100755 100644 9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc
9cecc1d4669ee8af2ca727a5d8cde10cd8b2d7cc M LICENSE
:100755 100644 8def1515bda70d7fdedf85eba89e8d1b5e6fccaa
8def1515bda70d7fdedf85eba89e8d1b5e6fccaa M NAMESPACE
:100755 100644 5fda75572488043df7fb8c0b7e47d24821cf57f1
5fda75572488043df7fb8c0b7e47d24821cf57f1 M NEWS
:040000 040000 42871e2b6cbce28bf2e0d54b6361170105b2848e
c8d818d0ed3196d391f914996dd26354004df665 M R
:100755 100644 0a64c7757d1c269af38d2d0e7796352927fa45da
0a64c7757d1c269af38d2d0e7796352927fa45da M README.md
:100644 000000 8e2bef6bf185b9bbc9da7e500bdb394396ccad99
0000000000000000000000000000000000000000 D bio_cor.R
:040000 040000 0b135855576605015e2325411b42c735a881fcae
378a5b97d68ecfa7430bebdaba2c5b6540e6051e M man
:040000 040000 4b15780e11519649aeabcb77a255585bdb68d778
594d15d7838d2096afda7b5697242e48bb7fce42 M tests
:040000 040000 2f5b1ca4c1cac07a33f72d110bb14877220774a5
6be3cd535391595a962f610dad103e88b2fc32bd M vignettes
Current branch devel is up to date.
ERROR: Not all changes have been committed into SVN, however the committed
ones (if any) seem to be successfully integrated into the working tree.
Please see the above messages for details.
See one of my previous attempts in
https://stat.ethz.ch/pipermail/bioc-devel/2017-April/010841.html. I rewrote
the history of commits to avoid having non-linear history and still the
same error. In a similar situation (
https://stat.ethz.ch/pipermail/bioc-devel/2016-April/009108.html) it was
suggested to seed the password but it hasn't worked:
$ svn log --limit 1 --username XXX
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioCor
------------------------------------------------------------------------
r129129 | hpages at fhcrc.org | 2017-04-24 21:50:57 +0200 (lun, 24 abr 2017) |
1 line
bump x.y.z versions to odd y after creation of 3_5 branch
------------------------------------------------------------------------
I wasn't prompted with the password, so I assume that I have the rights to
write in the repository.
Just to make sure I have correctly set up the git repository here is the
configuration:
$git config --local -l
core.repositoryformatversion=0
core.filemode=true
core.bare=false
core.logallrefupdates=true
remote.origin.url=https://github.com/llrs/BioCor.git
remote.origin.fetch=+refs/heads/*:refs/remotes/origin/*
branch.master.remote=origin
branch.master.merge=refs/heads/master
remote.bioc.url=https://github.com/Bioconductor-mirror/BioCor.git
remote.bioc.fetch=+refs/heads/*:refs/remotes/bioc/*
svn-remote.devel.url=
https://hedgehog.fhcrc.org/bioconductor//trunk/madman/Rpacks/BioCor
svn-remote.devel.fetch=:refs/remotes/git-svn-devel
svn-remote.release-3.5.url=
https://hedgehog.fhcrc.org/bioconductor//branches/RELEASE_3_5/madman/Rpacks/BioCor
svn-remote.release-3.5.fetch=:refs/remotes/git-svn-release-3.5
branch.release-3.5.remote=bioc
branch.release-3.5.merge=refs/heads/release-3.5
branch.devel.remote=bioc
branch.devel.merge=refs/heads/master
I don't understand where does the problem come from. Any guidance about how
to solve it, or how to solve the conflicts is welcome.
Thanks,
Lluís
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