[Bioc-devel] Error in BUILD report (anamiR)

[Hervé Pagès]

Hi Ti-Tai,

Not much you or we can do about this. Hopefully the RMySQL Windows
binary (currently 0.10.11) will soon be fixed on CRAN.

Thanks for keeping an eye on the build results for anamiR.

Best,
H.

On 05/04/2017 08:28 AM, 王棣台 wrote:
> Hi all,
>
> It turns out that this error is related to the RMySQL package(CRAN),
> and only happened in windows operating system.
>
> https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_rstats-2Ddb_RMySQL_issues_190&d=DwIGog&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VSEps9beT-guh1-ZsGnrNtM76EXvC0sLDGAvbHiyf7o&s=EttA79WmCSlSiTmcSwggrVyANbs5AysI8hyEOfn4MeI&e=
>
> It looks like it can be solved only if we downgraded the RMySQL version now.
> Can I choose not to import the newest RMySQL version while being tested in the BUILDREPORT?
>
>
> Ti-Tai
>
> ________________________________________
> 從: Obenchain, Valerie [Valerie.Obenchain at RoswellPark.org]
> 寄件日期: 2017年4月16日 上午 10:58
> 至: 王棣台; bioc-devel at r-project.org
> 主旨: Re: [Bioc-devel]  Error in BUILD report (anamiR)
>
> It looks like this has been resolved on today's report:
>
> https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bioconductor.org_checkResults_devel_bioc-2DLATEST_&d=DwIGog&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=VSEps9beT-guh1-ZsGnrNtM76EXvC0sLDGAvbHiyf7o&s=YqN2fHnUtseqzRMY6V06EubUXBY_m568PYWkUh0Zhb8&e=
>
> Valerie
>
>
> On 04/07/2017 02:21 PM, 王棣台 wrote:
>> Hi all,
>>
>> I got en error when it tries to create vignette in BUILD:
>> tokay2  Windows Server 2012 R2 Standard / x64
>>
>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with diagnostics:
>> could not run statement: Lost connection to MySQL server during query
>>
>> But for Linux or Mac, it all works.
>> I have no idea how to solve this problem.
>>
>> Many thanks,
>> Ti-Tai
>>
>>       [[alternative HTML version deleted]]
>>
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>>
>
>
>
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-- 
Hervé Pagès

Program in Computational Biology
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