[Bioc-devel] github mirror out of sync for ensembldb
Leonardo Collado Torres
lcollado at jhu.edu
Wed May 3 20:05:17 CEST 2017
Ahh, ok. What I meant was that the "master" branch in
Bioconductor-mirror is not up to date with bioc-devel. I could see
that aCGH did have a release-3.5 branch, but that the "master" branch
wasn't updated. You can see something similar for
shows version 1.9.11 while bioc-devel's
http://bioconductor.org/packages/devel/bioc/html/derfinder.html is at
Basically, the equivalent of older commits like
On Wed, May 3, 2017 at 1:54 PM, Rainer Johannes
<Johannes.Rainer at eurac.edu> wrote:
>> On 3 May 2017, at 19:51, Martin Morgan <Martin.Morgan at RoswellPark.org> wrote:
>> On 05/03/2017 01:10 PM, Leonardo Collado Torres wrote:
>>> I don't think that any of the Bioconductor-mirror repos have been
>>> updated to match the current bioc-devel branch. For example, look at
>>> which is one of the first packages by alphabetical order. My guess is
>>> that they are working on the svn to git transition plan described at
>> That's not correct, the repositories should be (in general) up to date. I believe Johannes' package is current (sorry, by the time I got to it it had healed itself and I didn't respond to the list).
> No prob. I've made an update to the package and after committing the change to the Bioc svn ensembldb was synced successfully.
>> aCGH actually had a RELEASE_3_5 branch; I'll investigate why aCGH and at least some other packages have not been fully updated after the branch.
>>> On Thu, Apr 27, 2017 at 6:52 AM, Rainer Johannes
>>> <Johannes.Rainer at eurac.edu> wrote:
>>>> the github mirror for ensembldb seems to be out of sync with the BioC svn, i.e. the DESCRIPTION in https://github.com/Bioconductor-mirror/ensembldb/blob/master/DESCRIPTION is still at version 1.99.14 while in the svn it's already 2.1.0.
>>>> First I thought the sync is not yet finished, but the release-3.5 was already created on the github mirror, so I guess sync must have been stuck somewhere.
>>>> [[alternative HTML version deleted]]
>>>> Bioc-devel at r-project.org mailing list
>>> Bioc-devel at r-project.org mailing list
>> This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
More information about the Bioc-devel