[Bioc-devel] Something about time out errors

[Rainer Johannes]

Do you have code fetching data from web resources? I also sometimes get timeout errors on ensembldb and I guess it's because in some unit tests I'm fetching data from the ensembl ftp server.

jo

> On 27 Mar 2017, at 18:37, Martin Morgan <Martin.Morgan at RoswellPark.org> wrote:
> 
> On 03/27/2017 12:22 PM, Aimin Yan wrote:
>> I am submitting a R package to bioconductor. but I got time out errors when
>> I performed R CMD check.
>> 
>> 
>> Is there a possible way that I can set up time to allow more time for R CMD
>> check? Or I have to use examples that they do not cost large time.
> 
> Submitted packages need to conform to package guidelines for space and time
> 
>  http://bioconductor.org/developers/package-guidelines/#correctness
> 
> so you'll need to develop realistic examples requiring modest resources.
> 
> Often long-running examples result from inefficient code, so it is worth-while to profile your code to discover where the most time is spent, and seek efficient implementations for that section of code either through better use of vectorization or more sophisticated algorithms.
> 
> Martin
> 
>> 
>> 
>> Thank you for your help
>> 
>> Aimin
>> 
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>> 
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