[Bioc-devel] Something about time out errors

[Martin Morgan]

On 03/27/2017 12:22 PM, Aimin Yan wrote:
> I am submitting a R package to bioconductor. but I got time out errors when
> I performed R CMD check.
>
>
> Is there a possible way that I can set up time to allow more time for R CMD
> check? Or I have to use examples that they do not cost large time.

Submitted packages need to conform to package guidelines for space and time

   http://bioconductor.org/developers/package-guidelines/#correctness

so you'll need to develop realistic examples requiring modest resources.

Often long-running examples result from inefficient code, so it is 
worth-while to profile your code to discover where the most time is 
spent, and seek efficient implementations for that section of code 
either through better use of vectorization or more sophisticated algorithms.

Martin

>
>
> Thank you for your help
>
> Aimin
>
> 	[[alternative HTML version deleted]]
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>


This email message may contain legally privileged and/or...{{dropped:2}}