[Bioc-devel] Writing examples for accessing web API

Nan Xiao road2stat at gmail.com
Tue Mar 7 20:27:26 CET 2017


- this check can be bypassed by
writing "partially working" examples,
for instance:

#' token = "foo"
#' \dontrun{
#' api(..., token)}

Best,
-Nan

On Tue, Mar 7, 2017 at 2:13 PM, Welliton Souza <well309 at gmail.com> wrote:

> Hi Sean,
>
> It doesn't require authentication. I've been using this server (
> http://1kgenomes.ga4gh.org) to provide working examples and do unit tests
> but I am not responsible for this server. However the package was developed
> to access any server endpoint that use the same API. There are many web
> resources to cover, the package takes some time to run all examples.
>
> Welliton
>
>
> Em ter, 7 de mar de 2017 16:03, Sean Davis <seandavi at gmail.com> escreveu:
>
> Hi, Welliton.
>
> Great question.  Just out of curiosity, what are the internet connection
> requirements that preclude running examples?  Is authentication required?
> Or are you connecting to a server that runs only intermittently?
>
> Sean
>
>
> On Tue, Mar 7, 2017 at 1:57 PM, Welliton Souza <well309 at gmail.com> wrote:
>
> Hi,
>
> I am developing a package that access web API endpoints. I wrote the
> examples within \dontrun{} due to internet connection requirements.
> However, the BiocCheck reports that I should provide at least 80 % of
> running examples. What I should do? The package is mainly focused on
> accessing web API and processing response data.
>
> Best regards,
> Welliton Souza
>
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