[Bioc-devel] GitHub mirror not synced for GenomicTuples

Malgorzata Nowicka gosia.nowicka at uzh.ch
Tue Mar 7 14:58:06 CET 2017


I have the same issue for the DRIMSeq package. The Bioconductor git mirror is not synchronized with the svn. 

Is there a way I could fix that or somebody from the core team has to do that?

I will use the squashing approach for the next time but if this happens again, should I write it to the Bioc-devel list or to some specific person?

Thank you for the help.

Best regards,


> On 22 Jan 2017, at 19:24, Peter Hickey <peter.hickey at gmail.com> wrote:
> Thanks, Martin!
> On 22 January 2017 at 13:10, Martin Morgan
> <martin.morgan at roswellpark.org <mailto:martin.morgan at roswellpark.org>> wrote:
>> On 01/22/2017 10:18 AM, Peter Hickey wrote:
>>> Hi,
>>> Recent changes (last few days) that successfully synced from my own GitHub
>>> repo to the BioC SVN and consequent builds don't seem to have propagated
>>> to
>>> the BioC GitHub mirror. Anything I should/can be doing to address this?
>> Thanks; I think these are back in sync?
>> The problem likely comes when there are many quick svn commits, each getting
>> synced to the Biocoonductor git mirror independently. Squashing commits that
>> you then sync to Bioconductor would be one approach to avoid this. (we are
>> making progress on direct support for git).
>> Martin
>>> Thanks,
>>> Pete
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