[Bioc-devel] strange error in Jenkins build for singleCellWorkflow

[Federico Giorgi]

Hi Aaron,

you may try to manually run a garbage collection on the DLLs
gcDLLs()
?gcDLLs

Federico

On 20 June 2017 at 15:09, Aaron Lun <alun at wehi.edu.au> wrote:

> Hi all,
>
>
> I'm getting a curious error in the Jenkins log when I try to build the
> singleCellWorkflow:
>
>
> http://docbuilder.bioconductor.org:8080/job/simpleSingleCell/48/label=
> master/console
>
>
> The key part is at the bottom:
>
>
> Error: package or namespace load failed for 'GenomicFeatures' in
> dyn.load(file, DLLpath = DLLpath, ...):
>  unable to load shared object '/var/lib/jenkins/R/x86_64-pc-
> linux-gnu-library/3.4/Rsamtools/libs/Rsamtools.so':
>   `maximal number of DLLs reached...
>
>
> The workflow had previously been running fine on the build system; I'm not
> quite sure what's going on here, given that it's not even failing at the
> point where I made the latest changes.
>
> Cheers,
>
> Aaron
>
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>
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