[Bioc-devel] Change in BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz

[Hervé Pagès]

Hi,

BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz was added to Bioconductor
in BioC 3.0 and has not changed since then. At least not on
master.bioconductor.org. These are the MD5 hashes of the tarball
for each version of BioC on master.bioconductor.org:

ubuntu at ip-172-30-4-20:/extra/www/bioc/packages$ md5sum 
3.*/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.0/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.1/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.2/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.3/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.4/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.5/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
672a988b28d8602afb2bd5595db7303b 
3.6/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz

Cheers,
H.


On 07/23/2017 04:31 AM, Vincent Carey wrote:
> I can't reproduce this.  Did you get
>
> 688,190,187
>
> bytes in your tar.gz?  Could it be an incomplete transfer?
>
> On Sat, Jul 22, 2017 at 5:47 PM, Janssen-10, R.R.E. <
> R.R.E.Janssen-10 at umcutrecht.nl> wrote:
>
>> Hello,
>>
>> It seems that the tarball BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz has
>> changed, without a change in version:
>>
>>  From https://urldefense.proofpoint.com/v2/url?u=http-3A__www.bioconductor.org_packages_release_data_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=sS7Y9rGFRoKmYrCl4y_IWoYFjj7HImCxWm4hYXClAZc&s=_ruyoTPdHqKb8FyuBLOAVMyZk_8tT1Wc8evh6fGTY2Y&e=
>> annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz...
>>   ...SC.hg19_1.4.0.tar.gz  656.3MiB  5.6MiB/s 01:58 [####################]
>> 100.0%
>> sha256 hash mismatch for output path `/gnu/store/
>> ml0l7hbplvnxssjcgbwzi8cnmcmnsypi-BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz'
>>    expected: 0479qx4bapgcp5chj10a63chk0s28x9cx1gamz3f5m3yd7jzwcf2
>>    actual:   1y0nqpk8cw5a34sd9hmin3z4v7iqm6hf6l22cl81vlbxqbjibxc8
>>
>> What has changed here, and why hasn't the version number been updated
>> accordingly?
>>
>> Kind regards,
>> Roel Janssen
>>
>>
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-- 
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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