[Bioc-devel] xps build problem on toluca2

cstrato cstrato at aon.at
Fri Jan 27 19:39:04 CET 2017


I will follow your advice and post on bioc-devel.

Christian


On 01/27/17 19:17, Obenchain, Valerie wrote:
> Yes, I will be taking over the build responsibilities with help from Herve.
>
> We don't want to give the impression that users need to contact us
> personally to install system dependencies. All dependencies should be
> listed in 'SystemRequirements' field of DESCRIPTION. xps does have root
> listed so it will eventually be installed on toluca2.
>
> I would encourage you to post on bioc-devel if the package were failing
> on an official builder due to missing dependencies. The problem may be
> more wide spread and it's helpful to have more than one person looking
> at it.
>
> Valerie
>
>
> On 01/27/2017 09:53 AM, cstrato wrote:
>> Dear Valerie,
>>
>> Thank you for your extensive reply.
>>
>> I understand that it does not affect any  users. It was only a reminder.
>>
>> Usually, I have contacted Dan personally, but I did not know whom to
>> write. I assume that you are now responsible for the setup. If this is
>> the case I will in the future contact you.
>>
>> Best regards,
>> Christian
>>
>>
>> On 01/27/17 15:46, Obenchain, Valerie wrote:
>>> Hi Christian,
>>>
>>> toluca2 is in the process of being set up and oaxaca is still the
>>> official Mac devel builder. There are a number of dependencies that need
>>> to be addressed on the new machine and we are working through them.
>>>
>>> It is important to understand that the error on toluca2 does not affect
>>> you or your users in any way. Binaries are propagated from oaxaca, not
>>> toluca2. Also, there are still no Mac binaries on CRAN for R 3.4. This
>>> means Bioc devel users on Mac need to install from source so they aren't
>>> concerned with the binaries at all.
>>>
>>> It may be confusing seeing build results for both Mac devel builders -
>>> internally we are tracking toluca2 but the one you need to watch is
>>> oaxaca. I don't think we announced this and maybe we should have to
>>> clarify what was going on. We will post on the mailing lists when
>>> toluca2 officially replaces oaxaca and at that point you'll only see
>>> toluca2 on the build report.
>>>
>>> Valerie
>>>
>>>
>>> On 01/26/2017 10:08 AM, cstrato wrote:
>>>> Dear all,
>>>>
>>>> Since Dan, who was always very helpful and took care of the special
>>>> requirements of my package 'xps', is no longer part of the BioC group,
>>>> and I do not know who is currently responsible for the BioC servers, I
>>>> am writing to you to inform you of the problem building 'xps' on the new
>>>> Mac server 'toluca2':
>>>> http://bioconductor.org/checkResults/devel/bioc-LATEST/xps/toluca2-buildsrc.html
>>>>
>>>> Could you please install ROOT on toluca2 to prevent the build error of
>>>> 'xps'.
>>>>
>>>> Since both, toluca2 and oaxaca, are running Mac OS X Mavericks, it
>>>> should be no problem to transfer ROOT and the corresponding settings to
>>>> toluca2.
>>>>
>>>> Thank you in advance.
>>>> Best regards,
>>>> Christian
>>>> _._._._._._._._._._._._._._._._._._
>>>> C.h.r.i.s.t.i.a.n   S.t.r.a.t.o.w.a
>>>> V.i.e.n.n.a           A.u.s.t.r.i.a
>>>> e.m.a.i.l:        cstrato at aon.at
>>>> _._._._._._._._._._._._._._._._._._
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>>>
>>>
>>>
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>
>
>
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