[Bioc-devel] asBam Default Destination

[Martin Morgan]

On 01/06/2017 06:00 AM, Dario Strbenac wrote:
> Good day,
>
> The destination parameter is mandatory and has no default.
>
>> asBam(samFile)
> Error in is(path, "RsamtoolsFile") :
>   argument "destination" is missing, with no default
>
> Would a good default be the same path as as the input file, but having the suffix "bam" instead of "sam"?
>

thanks for the suggestion, this (and likewise for asSam()) is 
implemented in 1.27.11.

Martin

> --------------------------------------
> Dario Strbenac
> University of Sydney
> Camperdown NSW 2050
> Australia
>
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