[Bioc-devel] asBam Default Destination

[Dario Strbenac]

Good day,

The destination parameter is mandatory and has no default.

> asBam(samFile)
Error in is(path, "RsamtoolsFile") : 
  argument "destination" is missing, with no default

Would a good default be the same path as as the input file, but having the suffix "bam" instead of "sam"?

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Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia