[Bioc-devel] maftools package not updated after pushing bug fixes.

[Martin Morgan]

On 01/06/2017 06:27 AM, Anand MT wrote:
> Hi Vladimir,
>
>
> Thanks for suggestion. I will try this and see if it helps.

yes hover over the red dot at the end of each line and it says that the 
build version (x.y.4) is lower than the published version (x.y.31) -- 
the elements of the version number are treated as integers, and 4 is 
less than 31 as Vladimir indicates.

Also, what is the underlying reason for the file that is sometimes not 
found? It looks like something left over from some attempt at parallel 
evaluation?

Martin

>
> ________________________________
> From: Vladimir Kiselev <vladimir.yu.kiselev at gmail.com>
> Sent: 06 January 2017 13:24:49
> To: Anand MT; Vincent Carey
> Cc: bioc-devel at r-project.org
> Subject: Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
>
>
> Maybe 1.0.4 is smaller than 1.0.30? Try to change to 1.0.31.
>
> On Fri, 6 Jan 2017, 05:32 Anand MT, <anand_mt at hotmail.com<mailto:anand_mt at hotmail.com>> wrote:
> Hi Vincent,
>
> Thanks for reply. I swear this was OK till yesterday for updated version! This "file not found" issue often occurs but it resolves by itself during next builds. Anyways, even when everything was OK, package didn't update to newer version.
>
>
>
> ________________________________
> From: Vincent Carey <stvjc at channing.harvard.edu<mailto:stvjc at channing.harvard.edu>>
> Sent: 06 January 2017 08:27:01
> To: Anand MT
> Cc: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
> Subject: Re: [Bioc-devel] maftools package not updated after pushing bug fixes.
>
>
>
> On Thu, Jan 5, 2017 at 9:33 PM, Anand MT <anand_mt at hotmail.com<mailto:anand_mt at hotmail.com><mailto:anand_mt at hotmail.com<mailto:anand_mt at hotmail.com>>> wrote:
> Hi,
>
>
> I recently pushed few bug fixes and removed some dependency packages which were no longer required. I did this a week ago and updated version to 1.0.4 from 1.0.30.
>
> Build reports are OK for updated version.
>
> http://bioconductor.org/checkResults/release/bioc-LATEST/maftools/
>
> Hi -- there is an error for linux build on that link.
>
>
>
>
> However, release site is still at older 1.0.30. How to proceed now ?
>
> Probably have to fix the build error --
>
>
> Done !
> Quitting from lines 152-153 (maftools.Rmd)
> Error: processing vignette 'maftools.Rmd' failed with diagnostics:
> file not found: /dev/shm/file6fd4ebc7d82
>
> Execution halted
>
>
>
>
> Thank you.
>
> -Anand
>
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