[Bioc-devel] readGAlignments Lacks strandMode

[Dario Strbenac]

Good day,

readGAlignmentPairs has strandMode but readGAlignments doesn't, which means that single-end strand-specific RNA-seq that generates sequences on the opposite strand to the gene needs a subsequent ifelse statement. The API could be more consistent by providing a strandMode option for readGAlignments and other similar functions in GenomicAlignments.

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Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia