[Bioc-devel] readGAlignments Lacks strandMode

Dario Strbenac dstr7320 at uni.sydney.edu.au
Fri Jan 6 08:00:06 CET 2017

Good day,

readGAlignmentPairs has strandMode but readGAlignments doesn't, which means that single-end strand-specific RNA-seq that generates sequences on the opposite strand to the gene needs a subsequent ifelse statement. The API could be more consistent by providing a strandMode option for readGAlignments and other similar functions in GenomicAlignments.

Dario Strbenac
University of Sydney
Camperdown NSW 2050

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