[Bioc-devel] Updating package

[Martin Morgan]

On 01/05/2017 01:25 PM, Charles Determan wrote:
> I committed my changes earlier this morning from the 'devel' branch via
> the 'git svn dcommit --add-author-from' the website
> (https://www.bioconductor.org/developers/how-to/git-mirrors/).  I have
> yet to see any changes on the build page though for the `devel`
> (http://master.bioconductor.org/checkResults/3.5/bioc-LATEST/).  Did I
> miss another step or is the build process reporting slow or perhaps I am
> looking in the wrong place still?

builds run nightly, check at the top of the page 
http://master.bioconductor.org/checkResults/3.5/bioc-LATEST/ for the 
date of the svn 'snapshot' and the date the build report is published. 
Currently these are

Snapshot Date: 2017-01-03 17:15:43 -0500 (Tue, 03 Jan 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks
Last Changed Rev: 125601 / Revision: 125601
Last Changed Date: 2017-01-03 17:11:11 -0500 (Tue, 03 Jan 2017)

This page was generated on 2017-01-04 16:34:16 -0500 (Wed, 04 Jan 2017).

You can see here

https://github.com/Bioconductor-mirror/OmicsMarkeR

that your commit is reflected in the mirror of the svn repository, and with

   svn co 
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OmicsMarkeR
   cd OmicsMarkeR
   svn log|head

with output

OmicsMarkeR$   svn log|head
------------------------------------------------------------------------
r125696 | c.determan | 2017-01-05 10:31:07 -0500 (Thu, 05 Jan 2017) | 3 
lines

increment sub-sub version for bug fix

From: Charles Determan <cdeterman at healthgrades.com>
------------------------------------------------------------------------
r123124 | hpages at fhcrc.org | 2016-10-27 18:00:06 -0400 (Thu, 27 Oct 
2016) | 1 line

auxiliary -concordance.tex files don't belong to the package source tree

that your commit has made it to the definitive location, the svn 
repository for your package.

Martin



>
> Regards,
> Charles
>
> On Thu, Jan 5, 2017 at 9:47 AM, Charles Determan <cdetermanjr at gmail.com
> <mailto:cdetermanjr at gmail.com>> wrote:
>
>     That seems to have been the issue.  It had been some time since I
>     needed to commit to bioconductor I forgot my username was
>     different.  Thank you Martin for pointing that simple problem out.
>     I have now 'dcommit' my 'devel' branch so if I understand correctly
>     the changes should be with bioconductor to apply accordingly.
>
>     Regards,
>     Charles
>
>     On Thu, Jan 5, 2017 at 9:22 AM, Martin Morgan
>     <martin.morgan at roswellpark.org
>     <mailto:martin.morgan at roswellpark.org>> wrote:
>
>         On 01/05/2017 10:18 AM, Charles Determan wrote:
>
>             Not to be pushy but did anyone have any insights with this?
>             I would hate
>             to have my package still sitting with the bug fix it requires.
>
>
>         maybe svn credentials,
>
>          git svn rebase --username=c.determan
>
>         ??
>
>
>             Thanks,
>             Charles
>
>             On Wed, Jan 4, 2017 at 11:15 AM, Charles Determan
>             <cdetermanjr at gmail.com <mailto:cdetermanjr at gmail.com>>
>             wrote:
>
>                 Hi,
>
>                 I received a notification that my package was failing
>                 some tests.  I have
>                 since made the necessary fixes and pushed my changes to
>                 the github repo.
>                 Previously this would result in http://gitsvn.bioconductor.
>                 org/git-push-hook updating the package for
>                 bioconductor.  I noticed
>                 however that this delivery fails and that the git-svn
>                 bridge is no longer
>                 available.
>
>                 How should I modify my current repository to update my
>                 package
>                 accordingly?
>
>                 I have my local changes in the 'devel' branch.
>                 I ran the update_ remotes.sh
>                 I run 'git svn rebase' but I get the following error:
>
>                 Can't create session: Unable to connect to a repository
>                 at URL '
>                 https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OmicsMarkeR
>                 <https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OmicsMarkeR>':
>                 Unexpected server error 500 'Internal Server Error' on
>                 '/bioconductor/trunk/madman/Rpacks/OmicsMarkeR' at
>                 /mingw64/share/perl5/site_perl/Git/SVN.pm line 717.
>
>                 What did I miss here?
>                 Thanks,
>
>                 Charles
>
>
>                     [[alternative HTML version deleted]]
>
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