[Bioc-devel] workflow page reorganization

[Shepherd, Lori]

Thanks for this!


Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

________________________________
From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Andrzej Ole¶ <andrzej.oles at gmail.com>
Sent: Friday, December 15, 2017 10:27:55 AM
To: Aaron Lun
Cc: bioc-devel at r-project.org
Subject: Re: [Bioc-devel] workflow page reorganization

Hi Aaron,

thank you for taking the lead. I've merged your suggested categories with
my preliminary arrangement (which just went online). I've also included an
index at the beginning of the page.

Any refinements are of course welcome, e.g. via PR to
https://github.com/Bioconductor/bioconductor.org

Cheers,
Andrzej


On Fri, Dec 15, 2017 at 2:08 PM, Aaron Lun <alun at wehi.edu.au> wrote:

> My proposed categories reflect my vested interests, but here goes:
>
> - Gene expression:
>     - rnaseqGene
>     - RNAseq123
>     - ExpressionNormalizationWorkflow
>     - RnaSeqGeneEdgeRQL
>
> - Epigenomics: (not quite sure what to call this)
>     - chipseqDB
>     - methylationArrayAnalysis
>     - generegulation
>
> - Single cell:
>     - simpleSingleCell
>     - cytofWorkflow (or in proteomics?)
>
> - Proteomics:
>     - proteomics
>     - highthroughputassays
>     - cytofWorkflow (see above)
>
> - Variant calling:
>     - Variant calling
>     - Nucleotide tallies
>     - eQTL
>
> - Resource querying: (needs a better name)
>     - recountWorkflow
>     - TCGAWorkflow
>
> - Other:
>     - everything else.
>
> I haven't looked at the Basic workflows, which are probably basic enough
> to be lumped together in that existing section.
>
> -A
>
> On 15/12/17 12:33, Shepherd, Lori wrote:
> > Hello all,
> >
> >
> > There has been a request to reorganize the workflow page as workflows
> have grown past basic and advanced.
> >
> >
> > http://bioconductor.org/help/workflows/
> >
> >
> > We wanted to check with the community what your thoughts were for
> categories.
> >
> > Thank you for your suggestions.
> >
> >
> >
> > Lori Shepherd
> >
> > Bioconductor Core Team
> >
> > Roswell Park Cancer Institute
> >
> > Department of Biostatistics & Bioinformatics
> >
> > Elm & Carlton Streets
> >
> > Buffalo, New York 14263
> >
> >
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