[Bioc-devel] EXTERNAL: unknown build error novel bioc. package

Marcel Ramos Marcel.RamosPerez at roswellpark.org
Wed Dec 13 20:37:35 CET 2017


Hi Maarten,

It appears that your vignette is pointing to a package that doesn't
exist in the build system.

Please reference `package = "brgedata"` instead.

Regards,

Marcel


On 12/13/2017 02:09 PM, Maarten van Iterson wrote:
> Dear all,
>
> Our new package, omicsPrint, has been accepted and added to the
> bioconductor build system but is not passing through on any system. Locally
> we are able to build install and execute the vignette. We have tried
> several things without success.
>
> The current error we got for version 0.99.29 on malbec2 is:
>
> Error: processing vignette 'omicsPrint.Rmd' failed with diagnostics:
> parsing failed--expected only one '!series_data_table_begin'
>
> (
> https://bioconductor.org/checkResults/3.7/bioc-LATEST/omicRexposome/malbec2-buildsrc.html
> )
>
> Anyone idea's or suggestions for debugging?
>
> Regards,
> Maarten and Davy
>
> 	[[alternative HTML version deleted]]
>
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