[Bioc-devel] splitting simpleSingleCell into self-contained vignettes

Andrzej Oleś andrzej.oles at gmail.com
Tue Dec 12 23:11:45 CET 2017

Thanks for you feedback Aaron!

On Tue, Dec 12, 2017 at 9:49 PM, Aaron Lun <alun at wehi.edu.au> wrote:

> Thanks Andrzej.
> > Thank you. I've edited the workflow index page by introducing a separate
> > "Single-cell Workflows" section, and by substituting the previous link to
> > your workflow by links to the individual parts.
> Great, I'm looking forward to seeing it. Do you know how frequently the
> index page (I assume we're talking about
> https://bioconductor.org/help/workflows/) updates? I assume your edits
> haven't propagated through the system yet.

Not sure, should be online by now

> > As discussed during EuroBioc, I'm happy to restructure the index page by
> > grouping workflows by topic. It would be really helpful if authors would
> > chime in to suggest the most relevant sections for their workflows.
> I can chip in with two that I'm involved in:
> "Differential Binding from ChIP-seq data
> <https://bioconductor.org/help/workflows/chipseqDB/>" => ChIP-seq
> workflows
> "Gene-level RNA-seq differential expression and pathway analysis
> <https://bioconductor.org/help/workflows/RnaSeqGeneEdgeRQL/>" => RNA-seq
> workflows
> Of course, it depends on how granular you want the topics to be. For
> example, I only see one ChIP-seq workflow, so that particular section
> might be a bit lonely for a while (I am planning to split that into two
> workflows later).
Right, we should probably avoid hair-splitting. We can start with a few,
say 6, and split up further according to demand as new ones are introduced.


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