[Bioc-devel] 'IlluminaHumanMethylation450k.db' package installation

Tim Triche, Jr. tim.triche at gmail.com
Thu Dec 7 17:24:20 CET 2017

1) It's supposed to be deprecated -- I'm not 100% sure why it's still in
release :-/ but will look into that
2) the FDb.InfiniumMethylation.hg19 package and
FDb.InfiniumMethylation.hg38 package are meant as its successor[s], hence
the error message:

  error: 'fun' is defunct.
Use 'FDb.InfiniumMethylation.hg19' instead.
Use 'FDb.InfiniumMethylation.hg18' instead.
Use 'mapToGenome() function in minfi or methylumi' instead.

3) This question is better asked on the Bioconductor support website,
https://support.bioconductor.org/, so that it comes up in Google searches,
like so:




On Thu, Dec 7, 2017 at 10:48 AM, Maryam Hosseini Asanjan <hmaryam at bgsu.edu>

> Hi,
> I am trying to install the 'IlluminaHumanMethylation450k.db' package the
> way it is described at the bioconductor website (https://bioconductor.org/
> packages/release/data/annotation/html/IlluminaHumanMethylation450k.db.html)
> but it does not work.
> I read some other websites and some mention that the package is not
> working anymore. Is that true? If not, Is there any other way to install
> the package?
> Thanks,
> Maryam
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