[Bioc-devel] ensembl 90 gtfs and fasta twobits have been added to AnnotationHub

Shepherd, Lori Lori.Shepherd at RoswellPark.org
Mon Aug 28 19:45:15 CEST 2017

The ensembl 90 gtf (converted to GRanges on the fly) and fasta (twobit files)
been added to AnnotationHub and are currently available in Bioc3.6

> hub = AnnotationHub()
snapshotDate(): 2017-08-28
> length(query(hub, c("ensembl", "gtf", "release-90")))
[1] 248
> length(query(hub, c("fasta", "release-90", "twobit")))
[1] 413

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

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