[Bioc-devel] Package changes not merging with upstream

[Matt Richards]

Thanks Martin, I retried the push to upstream and it works just fine now.

Thanks
Matt



On Fri, Aug 25, 2017 at 10:27 AM, Martin Morgan <
martin.morgan at roswellpark.org> wrote:

> On 08/25/2017 01:17 PM, Matt Richards wrote:
>
>> Hi all,
>>
>> I maintain the "trena" package and I'm attempting to sync the changes from
>> my in-house Github repo with the Bioconductor version. I submitted my ssh
>> keys last week, so essentially I'm following these instructions:
>>
>> https://www.bioconductor.org/developers/how-to/git/sync-
>> existing-repositories/
>>
>> I've seemingly made it from #1-8 successfully, but in trying to push to
>> the
>> upstream branch, I get an error:
>>
>> ------
>>
>> buoy:trena mrichard$ git push upstream master
>>
>> FATAL: W any packages/trena m.richards DENIED by fallthru
>>
>> (or you mis-spelled the reponame)
>>
>> fatal: Could not read from remote repository.
>>
>> Please make sure you have the correct access rights
>>
>> and the repository exists.
>>
>> ------
>> I checked on my remotes via git config as well:
>>
>> ------
>>
>> remote.bioc.url=https://hedgehog.fhcrc.org/bioconductor/trunk/madman/
>> Rpacks/TReNA
>>
>> remote.bioc.fetch=+refs/heads/*:refs/remotes/bioc/*
>>
>> remote.upstream.url=git at git.bioconductor.org:packages/trena.git
>>
>> remote.upstream.fetch=+refs/heads/*:refs/remotes/upstream/*
>>
>> ------
>>
>> Any idea on how I can navigate this error? Ultimately, we've made a lot of
>> changes to the repo (including changing the capitalization of the package
>> from "TReNA" to "trena") and I definitely want to get in those updates for
>> the next release.
>>
>
> This was an error on our side and should be fixed now.
>
> We maintain a 'manifest' of packages in each Bioconductor release. The
> package name was changed in the manifest and in the svn repository, but not
> in the svn permissions file. When we made git permissions, the svn
> permissions weren't copied over because the svn path wasn't in the manifest.
>
> Sorry for the inconvenience.
>
> Martin
>
>
>> Thanks
>> Matt
>>
>>
>
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-- 
Matthew Richards
Postdoctoral Fellow
Institute for Systems Biology

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