[Bioc-devel] Commit changes to an existing package using the GitHub repositories

[Turaga, Nitesh]

Hi Gabriela,


> On Aug 24, 2017, at 12:01 PM, Gabriela Merino <gmerino at bdmg.com.ar> wrote:
> 
> I followed the Bioc instructions and pushed my changes (fixing a bug error( on release and devel. But, I can't see the changes on GitHub (https://github.com/Bioconductor-mirror/TarSeqQC). Is this automatic or can take time?

I see on the git-server that your changes have been made. Regarding the bioconductor-mirror (the link you refer to), that is stagnant, i.e, we will be deprecating that mirror entirely. So you will not see any further changes on that. (https://stat.ethz.ch/pipermail/bioc-devel/2017-August/011329.html)

If you intend to maintain a Github version of your package (a lot of maintainers do), then please follow this link. (http://bioconductor.org/developers/how-to/git/maintain-github-bioc/). 

Once you go through those steps, you are responsible for maintaining your package on Github. You can follow the rest of the help page and the FAQ section for more information. If you have ay further questions, feel free to post on this thread.

Best,

Nitesh


> Thank you.
> 
> 
> 
> 2017-08-24 10:59 GMT-03:00 Turaga, Nitesh <Nitesh.Turaga at roswellpark.org>:
> Please try again, your key has been added.
> 
> 
> > On Aug 24, 2017, at 9:53 AM, Gabriela Merino <gmerino at bdmg.com.ar> wrote:
> >
> > I'm trying to fix a little error in the TarSeqQC plot method using the
> > GitHub repositories. I found the instructions for existing package
> > maintenance here (https://bioconductor.org/developers/how-to/git/
> > maintain-bioc-only/), so I generated an SSH key and then added it to my Git
> > profile (user=gamerino). The added key looks like
> >
> > ```
> > ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAklOUpkDHrfHY17SbrmTIpNLTGK9Tjom/BWDSU
> > GPl+nafzlHDTYW7hdI4yZ5ew18JH4JW9jbhUFrviQzM7xlELEVf4h9lFX5QVkbPppSwg0cda3
> > Pbv7kOdJ/MTyBlWXFCR+HAo3FXRitBqxiX1nKhXpHAZsMciLq8V6RjsNAQwdsdMFvSlVK/7XA
> > t3FaoJoAsncM1Q9x5+3V0Ww68/eIFmb1zuUFljQJKprrX88XypNDvjYNby6vw/Pb0rwert/En
> > mZ+AW4OZPnTPI89ZPmVMLuayrD2cE86Z/il8b+gw3r3+1nKatmIkjn2so1d01QraTlMqVSsbx
> > NrRFi9wrf+M7Q==
> > ```
> >
> > I completed the google form (https://docs.google.com/forms/d/e/
> > 1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform) on
> > Tuesday's morning, receiving a message that in the course of a business day
> > I was going to receive the permission.
> >
> > When I tried to clone the TarSeqQC repository to my PC I obtained
> >
> > git clone git at git.bioconductor.org:packages/TarSeqQC
> >
> > Cloning into 'TarSeqQC'...
> > Permission denied (publickey).
> > fatal: Could not read from remote repository.
> >
> > Please make sure you have the correct access rights
> > and the repository exists.
> >
> > So I do not know if I've done something wrong or incompletely or I have to
> > wait a little longer for the permissions.
> >
> > Thank you,
> >
> > Gabriela
> >
> >       [[alternative HTML version deleted]]
> >
> > _______________________________________________
> > Bioc-devel at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> 
> 
> 
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