[Bioc-devel] COHCAP GitHub Update

Turaga, Nitesh Nitesh.Turaga at RoswellPark.org
Wed Aug 23 23:18:26 CEST 2017


> On Aug 23, 2017, at 5:13 PM, Charles Warden <cwarden45 at gmail.com> wrote:
> Hi,
> I downloaded code for the COHCAP Bioconductor SVN repository (
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COHCAP/), made
> some changes, and then tried to commit those changes.  However, I got an
> error message that the SVN repository is locked, so the changes could not
> be uploaded because of a switch to git.
> I have a GitHub account, and I uploaded the COHCAP code (with the latest
> round of changes) to GitHub:
> https://github.com/cwarden45/COHCAP

So far so good.
> However, I am not sure how to make this the new Bioconductor repository.  I
> am trying to follow the instructions available here:
> http://bioconductor.org/developers/how-to/git/sync-existing-repositories/
> However, if I run the command *git remote add upstream
> git at git.bioconductor.org:packages/COHCAP.gi**t*, then I get an error
> message: *fatal: Not a git repository.*

Can you paste the command and the error message as is, this formatting seems off.

> Can you please help me update the COHCAP Bioconductor repository and
> understand how this is now managed through GitHub?
> Also, I posted this question on the Support forum, but that may have not
> been the right venue.  So, I apologize for the confusion.
> Thanks,
> Charles
> 	[[alternative HTML version deleted]]
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