[Bioc-devel] CRAN dependency missing

[Siddhartha Bagaria]

Thank you so much Valerie for your quick response.

On Wed, Aug 23, 2017, 09:35 Obenchain, Valerie <
Valerie.Obenchain at roswellpark.org> wrote:

> Hi Siddhartha,
>
> I've installed RProtoBuf on malbec1. As you can see from the clean Windows
> build, tokays1 already has the necessary system dependencies. There is no
> El Capitan Mac binary for RProtoBuf
>
> https://cran.r-project.org/web/packages/RProtoBuf/index.html
>
> so we may be installing this from source. I'll talk with Herve about it
> but in the meantime it may fail on the Mac (veracruz1).
>
> Valerie
>
>
>
> On 08/22/2017 10:51 PM, Siddhartha Bagaria wrote:
>
> Hello,
>
> The package GoogleGenomics has been failing
>
> <http://bioconductor.org/checkResults/devel/bioc-LATEST/GoogleGenomics/malbec1-checksrc.html> <http://bioconductor.org/checkResults/devel/bioc-LATEST/GoogleGenomics/malbec1-checksrc.html>
>
>
> the
> CHECK stage because of a missing CRAN dependency (RProtoBuf
>
> <https://cran.r-project.org/web/packages/RProtoBuf/index.html> <https://cran.r-project.org/web/packages/RProtoBuf/index.html>) in the
> Suggests section.
>
> Is there something I can do to help get RProtoBuf set up on the build host?
> This package dependency has a system requirement that can be met on Ubuntu
> 16.04 with
>
> apt-get install libprotoc-dev libprotobuf-dev protobuf-compiler
>
>
> Thank you!
>
> Siddhartha
>
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