[Bioc-devel] CRAN dependency missing

[Obenchain, Valerie]

Hi Siddhartha,

I've installed RProtoBuf on malbec1. As you can see from the clean Windows build, tokays1 already has the necessary system dependencies. There is no El Capitan Mac binary for RProtoBuf

https://cran.r-project.org/web/packages/RProtoBuf/index.html

so we may be installing this from source. I'll talk with Herve about it but in the meantime it may fail on the Mac (veracruz1).

Valerie


On 08/22/2017 10:51 PM, Siddhartha Bagaria wrote:

Hello,

The package GoogleGenomics has been failing
<http://bioconductor.org/checkResults/devel/bioc-LATEST/GoogleGenomics/malbec1-checksrc.html><http://bioconductor.org/checkResults/devel/bioc-LATEST/GoogleGenomics/malbec1-checksrc.html>
the
CHECK stage because of a missing CRAN dependency (RProtoBuf
<https://cran.r-project.org/web/packages/RProtoBuf/index.html><https://cran.r-project.org/web/packages/RProtoBuf/index.html>) in the
Suggests section.

Is there something I can do to help get RProtoBuf set up on the build host?
This package dependency has a system requirement that can be met on Ubuntu
16.04 with

apt-get install libprotoc-dev libprotobuf-dev protobuf-compiler


Thank you!

Siddhartha

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