[Bioc-devel] CRAN dependency missing

Obenchain, Valerie Valerie.Obenchain at RoswellPark.org
Wed Aug 23 18:35:36 CEST 2017

Hi Siddhartha,

I've installed RProtoBuf on malbec1. As you can see from the clean Windows build, tokays1 already has the necessary system dependencies. There is no El Capitan Mac binary for RProtoBuf


so we may be installing this from source. I'll talk with Herve about it but in the meantime it may fail on the Mac (veracruz1).


On 08/22/2017 10:51 PM, Siddhartha Bagaria wrote:


The package GoogleGenomics has been failing
CHECK stage because of a missing CRAN dependency (RProtoBuf
<https://cran.r-project.org/web/packages/RProtoBuf/index.html><https://cran.r-project.org/web/packages/RProtoBuf/index.html>) in the
Suggests section.

Is there something I can do to help get RProtoBuf set up on the build host?
This package dependency has a system requirement that can be met on Ubuntu
16.04 with

apt-get install libprotoc-dev libprotobuf-dev protobuf-compiler

Thank you!


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