[Bioc-devel] Windows binaries for the new release?

[Martin Morgan]

On 04/26/2017 10:00 AM, James W. MacDonald wrote:
> I see the binaries on the respective web pages, but biocLite seems not to:

I'm not 100% sure but can you try again in a new R session? I think you 
have a cached version of the repository index.

Martin

>
>> biocLite()
> BioC_mirror: https://bioconductor.org
> Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21).
> installation path not writeable, unable to update packages: foreign
> Old packages: 'AnnotationDbi', 'Biobase', 'BiocGenerics', 'biomaRt',
> 'IRanges',
>   'S4Vectors'
> Update all/some/none? [a/s/n]: a
>
>   There are binary versions available but the source versions are later:
>                binary source needs_compilation
> AnnotationDbi  1.37.4 1.38.0             FALSE
> Biobase        2.35.1 2.36.0              TRUE
> BiocGenerics   0.21.3 0.22.0             FALSE
> biomaRt       2.31.10 2.32.0             FALSE
> IRanges        2.9.19 2.10.0              TRUE
> S4Vectors     0.13.17 0.14.0              TRUE
>
> Do you want to install from sources the packages which need compilation?
> y/n:
>
>> sessionInfo()
> R version 3.4.0 (2017-04-21)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> Running under: Windows 10 x64 (build 14393)
>
> Matrix products: default
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.26.0
>
> loaded via a namespace (and not attached):
> [1] compiler_3.4.0 tools_3.4.0
>


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