[Bioc-devel] Windows binaries for the new release?

James W. MacDonald jmacdon at uw.edu
Wed Apr 26 16:00:41 CEST 2017

I see the binaries on the respective web pages, but biocLite seems not to:

> biocLite()
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21).
installation path not writeable, unable to update packages: foreign
Old packages: 'AnnotationDbi', 'Biobase', 'BiocGenerics', 'biomaRt',
Update all/some/none? [a/s/n]: a

  There are binary versions available but the source versions are later:
               binary source needs_compilation
AnnotationDbi  1.37.4 1.38.0             FALSE
Biobase        2.35.1 2.36.0              TRUE
BiocGenerics   0.21.3 0.22.0             FALSE
biomaRt       2.31.10 2.32.0             FALSE
IRanges        2.9.19 2.10.0              TRUE
S4Vectors     0.13.17 0.14.0              TRUE

Do you want to install from sources the packages which need compilation?

> sessionInfo()
R version 3.4.0 (2017-04-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)

Matrix products: default

[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.26.0

loaded via a namespace (and not attached):
[1] compiler_3.4.0 tools_3.4.0

James W. MacDonald, M.S.
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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