[Bioc-devel] Vignette update after change in git mirror repo

[Maia Smith]

Thanks, Hervé. Very strange, when I checked that link earlier today, it
appeared to still have errors. All good now!

On Sun, Apr 23, 2017 at 4:49 PM, Hervé Pagès <hpages at fredhutch.org> wrote:

> Hi Maia,
>
> On 04/23/2017 10:09 AM, Maia Smith wrote:
>
>> Just an update - the checked in code is passing R CMD check on my computer
>> (no errors, 1 warning), and has a version bump from 0.99.9 to 0.99.10, but
>> I still haven't seen a build attempt on bioconductor since I committed the
>> code a few days ago.
>>
>
> Not sure where you are looking at or what you mean exactly by "build
> attempt" but, unless our build system is down, every Bioconductor
> software package gets built and checked every day. timescape is no
> exception:
>
>   https://bioconductor.org/checkResults/3.5/bioc-LATEST/timescape/
>
> Cheers,
> H.
>
> I'm a bit worried because I know the release is
>> occurring tomorrow...
>>
>> On Sat, Apr 22, 2017 at 3:34 PM, Maia Smith <mas29 at sfu.ca> wrote:
>>
>> Thank you, Sean and James! I think this fixed the problem, Sean - will
>>> know when the build is finished today. MUCH appreciated.
>>>
>>> On Fri, Apr 21, 2017 at 4:13 PM, Sean Davis <seandavi at gmail.com> wrote:
>>>
>>> Sorry I lead you astray, earlier, Maia.
>>>>
>>>> In general, you do not need to install the package in the vignette. The
>>>> first code block in the vignette where you did "eval=FALSE" is the way
>>>> to
>>>> go.  The second code block where you actually do the installation is
>>>> unnecessary. The package is installed by R in order to build the
>>>> vignette.
>>>>
>>>> Sean
>>>>
>>>>
>>>>
>>>
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>>
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>>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
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> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
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>

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