[Bioc-devel] citation on landing page does not update

[Obenchain, Valerie]

A little more on this.

Martin pointed out the problem is likely the nested quotes in the
textVersion field instead of the double dash in the pages field.

The hint is in the build report output

 
http://bioconductor.org/checkResults/3.5/bioc-LATEST/pathprint/malbec2-checksrc.html

where it says the problem is in line 18:

Invalid citation information in ‘inst/CITATION’:
  Error in parse(con): 18:181: unexpected symbol
  17:     pages ="68--81",
  18:     textVersion = paste("Altschuler, G. M., O. Hofmann, I.
Kalatskaya, R. Payne, S. J. Ho Sui, U. Saxena, A. V. Krivtsov, S. A.
Armstrong, T. Cai, L. Stein and W. A. Hide (2013). "Pathprinting
...
                                  

Even though the package 'passed' build and check it's worth look at the
build output, especially if you have warnings.

Valerie



On 04/23/2017 07:04 AM, Obenchain, Valerie wrote:
> Looking at the build logs we see this error for the data package:
>
> ERROR: extractCitations
>   tarball:
> /home/biocadmin/PACKAGES/3.5/data/experiment/src/contrib/pathprintGEOData_1.0.0.tar.gz
>   error: /tmp/Rtmpo8k7A4/pathprintGEOData/inst/CITATION:18:181:
> unexpected symbol
> 17:     pages ="68--81",
> 18:     textVersion = paste("Altschuler, G. M., O. Hofmann, I.
> Kalatskaya, R. Payne, S. J. Ho Sui, U. Saxena, A. V. Krivtsov, S. A.
> Armstrong, T. Cai, L. Stein and W. A. Hide (2013). "Pathprinting
>
>
> and the same for software:
>
> ERROR: extractCitations
>   tarball:
> /home/biocadmin/PACKAGES/3.5/bioc/src/contrib/pathprint_1.2.4.tar.gz
>   error: 18:181: unexpected symbol
> 17:     pages ="68--81",
> 18:     textVersion = paste("Altschuler, G. M., O. Hofmann, I.
> Kalatskaya, R. Payne, S. J. Ho Sui, U. Saxena, A. V. Krivtsov, S. A.
> Armstrong, T. Cai, L. Stein and W. A. Hide (2013). "Pathprinting
>
>
> Replace the double dash with single and it should be fine.
>
> Valerie
>
>
>
> On 04/23/2017 05:29 AM, Sokratis Kariotis wrote:
>> Dear all,
>>
>> I have updated the CITATION file in my packages pathprint and
>> pathprintGEOData (to be ready for the release), but in the landing page the
>> old citation still shows (even the package version in the citation is
>> different than the one in the details). How can I mend this? Thanks in
>> advance!
>>
>> https://bioconductor.org/packages/devel/bioc/html/pathprint.html
>> https://www.bioconductor.org/packages/devel/data/experiment/html/pathprintGEOData.html
>>
>> Regards,
>> Sokratis Kariotis
>>
>> 	[[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>



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