[Bioc-devel] How to solve warnings generated by loading other packages

Obenchain, Valerie Valerie.Obenchain at RoswellPark.org
Fri Apr 21 21:33:28 CEST 2017


I'll respond on the github issue tracker where the package review is
taking place.


On 04/21/2017 08:27 AM, Kristoffer Vitting-Seerup wrote:
> Hi Everybody
> I'm currently in the process of adding my newest R package to Bioconductor
> and the last issue I need to solve i a warning generated when loading other
> packages (which I depend on) due to functions with identical names in those
> packages.
> More specifcally I get this error:
> * checking whether package 'IsoformSwitchAnalyzeR' can be installed
> ... [33s] WARNING
> Found the following significant warnings:
>   Warning: replacing previous import 'plyr::desc' by 'IRanges::desc'
> when loading 'IsoformSwitchAnalyzeR'
>   Warning: replacing previous import 'GenomicRanges::promoters' by
> 'cummeRbund::promoters' when loading 'IsoformSwitchAnalyzeR'
>   Warning: replacing previous import 'plyr::count' by
> 'cummeRbund::count' when loading 'IsoformSwitchAnalyzeR'
> Which registre with a warning (only) on tokay2 (windows).
> How do I solve this problem?
> In advance - thanks.
> The details about the submission and package can be found here:
> https://github.com/Bioconductor/Contributions/issues/349
> http://bioconductor.org/spb_reports/IsoformSwitchAnalyzeR_buildreport_20170421060205.html
> https://github.com/kvittingseerup/IsoformSwitchAnalyzeR

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