[Bioc-devel] Object not found in vignette

[Michael Lawrence]

Did you "svn add" the file?

On Thu, Apr 20, 2017 at 3:10 PM, 王棣台 <r04945002 at ntu.edu.tw> wrote:
> I find that my data file will not change after I did any commit.
> That might be the problem.
> Is there anything I forget to do?
>
> Ti-Tai
> ________________________________________
> 從: Hervé Pagès [hpages at fredhutch.org]
> 寄件日期: 2017年4月21日 上午 06:00
> 至: 王棣台; bioc-devel at r-project.org
> 主旨: Re: [Bioc-devel] Object not found in vignette
>
> Also recently you bumped the version from 1.1.* to 1.2.*
> then went back to 1.1.* again. As a result the version that
> is available via biocLite() is 1.2.2, as reflected on the package
> landing page:
>
>    https://bioconductor.org/packages/3.5/bioc/html/anamiR.html
>
> Any change you do to your package now won't propagate unless
> you bump the version to > 1.2.2.
>
> H.
>
> On 04/20/2017 02:52 PM, 王棣台 wrote:
>> it should be in my package since anamiR version 1.1.8
>> That is weird.
>>
>> Ti-Tai
>> ________________________________________
>> 從: Hervé Pagès [hpages at fredhutch.org]
>> 寄件日期: 2017年4月21日 上午 05:49
>> 至: 王棣台; bioc-devel at r-project.org
>> 主旨: Re: [Bioc-devel] Object not found in vignette
>>
>> On 04/20/2017 02:45 PM, Hervé Pagès wrote:
>>> On 04/20/2017 02:36 PM, 王棣台 wrote:
>>>> That missing object is a list format data generated by myself,
>>>> so I don't think it would be about Depends, Imports, or Suggests.
>>>> Except this one, other generated data can be found.
>>>
>>> And where did you put this data set so that data(table_pre) can
>>> find it?
>>
>> I mean the other generated data sets can be found because they are
>> in your package but I don't see the table_pre data set there. Did you forget
>> to commit it?
>>
>> H.
>>
>>>
>>> H.
>>>
>>>>
>>>> Ti-Tai
>>>>
>>>> ________________________________________
>>>> 從: Hervé Pagès [hpages at fredhutch.org]
>>>> 寄件日期: 2017年4月21日 上午 05:16
>>>> 至: 王棣台; bioc-devel at r-project.org
>>>> 主旨: Re: [Bioc-devel] Object not found in vignette
>>>>
>>>> Why don't you give us the name of your package so we can look
>>>> at it? I suspect something is missing in your Depends, Imports,
>>>> or Suggests field. Works for you because you have the missing
>>>> package installed on your machine but not on the build machine
>>>> because the package is missing there. The build system (and your
>>>> users) doesn't have this package so the vignette fails there.
>>>> By adding the package to Depends, Imports, or Suggests, you let
>>>> the build system know that this package needs to be installed
>>>> before it tries to build the vignette.
>>>>
>>>> H.
>>>>
>>>> On 04/20/2017 01:51 PM, 王棣台 wrote:
>>>>> Hi all,
>>>>>
>>>>> I kept getting the same Error from BUILD REPORT:
>>>>>
>>>>>
>>>>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with
>>>>> diagnostics:
>>>>> object 'table_pre' not found
>>>>>
>>>>> However, I did confirm my package with R CMD BUILD and CHECK before
>>>>> committing, and there was no errors and warnings.
>>>>>
>>>>> I really don't know what is the problem.
>>>>>
>>>>> Does anyone have the same error before?
>>>>>
>>>>> Many Thanks,
>>>>>
>>>>> Ti-Tai Wang
>>>>>
>>>>>       [[alternative HTML version deleted]]
>>>>>
>>>>> _______________________________________________
>>>>> Bioc-devel at r-project.org mailing list
>>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=TK-8woT9u1jslARFhHX9Y_pg-0Cg9S5vwIyvMX86pHU&s=3gO7lG40pXAtK-3RkKJ-yhJdwqUw-NZwBORf4PaN7xg&e=
>>>>>
>>>>>
>>>>
>>>> --
>>>> Hervé Pagès
>>>>
>>>> Program in Computational Biology
>>>> Division of Public Health Sciences
>>>> Fred Hutchinson Cancer Research Center
>>>> 1100 Fairview Ave. N, M1-B514
>>>> P.O. Box 19024
>>>> Seattle, WA 98109-1024
>>>>
>>>> E-mail: hpages at fredhutch.org
>>>> Phone:  (206) 667-5791
>>>> Fax:    (206) 667-1319
>>>>
>>>
>>
>> --
>> Hervé Pagès
>>
>> Program in Computational Biology
>> Division of Public Health Sciences
>> Fred Hutchinson Cancer Research Center
>> 1100 Fairview Ave. N, M1-B514
>> P.O. Box 19024
>> Seattle, WA 98109-1024
>>
>> E-mail: hpages at fredhutch.org
>> Phone:  (206) 667-5791
>> Fax:    (206) 667-1319
>>
>
> --
> Hervé Pagès
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>
> _______________________________________________
> Bioc-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel