[Bioc-devel] Object not found in vignette

[王棣台]

I find that my data file will not change after I did any commit.
That might be the problem.
Is there anything I forget to do?

Ti-Tai
________________________________________
Ä: Herv¨¦ Pag¨¨s [hpages at fredhutch.org]
¼Ä¼þÈÕÆÚ: 2017Äê4ÔÂ21ÈÕ ÉÏÎç 06:00
ÖÁ: Íõé¦Ì¨; bioc-devel at r-project.org
Ö÷Ö¼: Re: [Bioc-devel] Object not found in vignette

Also recently you bumped the version from 1.1.* to 1.2.*
then went back to 1.1.* again. As a result the version that
is available via biocLite() is 1.2.2, as reflected on the package
landing page:

   https://bioconductor.org/packages/3.5/bioc/html/anamiR.html

Any change you do to your package now won't propagate unless
you bump the version to > 1.2.2.

H.

On 04/20/2017 02:52 PM, Íõé¦Ì¨ wrote:
> it should be in my package since anamiR version 1.1.8
> That is weird.
>
> Ti-Tai
> ________________________________________
> Ä: Herv¨¦ Pag¨¨s [hpages at fredhutch.org]
> ¼Ä¼þÈÕÆÚ: 2017Äê4ÔÂ21ÈÕ ÉÏÎç 05:49
> ÖÁ: Íõé¦Ì¨; bioc-devel at r-project.org
> Ö÷Ö¼: Re: [Bioc-devel] Object not found in vignette
>
> On 04/20/2017 02:45 PM, Herv¨¦ Pag¨¨s wrote:
>> On 04/20/2017 02:36 PM, Íõé¦Ì¨ wrote:
>>> That missing object is a list format data generated by myself,
>>> so I don't think it would be about Depends, Imports, or Suggests.
>>> Except this one, other generated data can be found.
>>
>> And where did you put this data set so that data(table_pre) can
>> find it?
>
> I mean the other generated data sets can be found because they are
> in your package but I don't see the table_pre data set there. Did you forget
> to commit it?
>
> H.
>
>>
>> H.
>>
>>>
>>> Ti-Tai
>>>
>>> ________________________________________
>>> Ä: Herv¨¦ Pag¨¨s [hpages at fredhutch.org]
>>> ¼Ä¼þÈÕÆÚ: 2017Äê4ÔÂ21ÈÕ ÉÏÎç 05:16
>>> ÖÁ: Íõé¦Ì¨; bioc-devel at r-project.org
>>> Ö÷Ö¼: Re: [Bioc-devel] Object not found in vignette
>>>
>>> Why don't you give us the name of your package so we can look
>>> at it? I suspect something is missing in your Depends, Imports,
>>> or Suggests field. Works for you because you have the missing
>>> package installed on your machine but not on the build machine
>>> because the package is missing there. The build system (and your
>>> users) doesn't have this package so the vignette fails there.
>>> By adding the package to Depends, Imports, or Suggests, you let
>>> the build system know that this package needs to be installed
>>> before it tries to build the vignette.
>>>
>>> H.
>>>
>>> On 04/20/2017 01:51 PM, Íõé¦Ì¨ wrote:
>>>> Hi all,
>>>>
>>>> I kept getting the same Error from BUILD REPORT:
>>>>
>>>>
>>>> Error: processing vignette 'IntroductionToanamiR.Rmd' failed with
>>>> diagnostics:
>>>> object 'table_pre' not found
>>>>
>>>> However, I did confirm my package with R CMD BUILD and CHECK before
>>>> committing, and there was no errors and warnings.
>>>>
>>>> I really don't know what is the problem.
>>>>
>>>> Does anyone have the same error before?
>>>>
>>>> Many Thanks,
>>>>
>>>> Ti-Tai Wang
>>>>
>>>>       [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel at r-project.org mailing list
>>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=TK-8woT9u1jslARFhHX9Y_pg-0Cg9S5vwIyvMX86pHU&s=3gO7lG40pXAtK-3RkKJ-yhJdwqUw-NZwBORf4PaN7xg&e=
>>>>
>>>>
>>>
>>> --
>>> Herv¨¦ Pag¨¨s
>>>
>>> Program in Computational Biology
>>> Division of Public Health Sciences
>>> Fred Hutchinson Cancer Research Center
>>> 1100 Fairview Ave. N, M1-B514
>>> P.O. Box 19024
>>> Seattle, WA 98109-1024
>>>
>>> E-mail: hpages at fredhutch.org
>>> Phone:  (206) 667-5791
>>> Fax:    (206) 667-1319
>>>
>>
>
> --
> Herv¨¦ Pag¨¨s
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319
>

--
Herv¨¦ Pag¨¨s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fredhutch.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319