[Bioc-devel] Bioconductor 3.5 release: potential deprecations

Obenchain, Valerie Valerie.Obenchain at RoswellPark.org
Thu Apr 20 14:43:14 CEST 2017

Hi Roel,

Thank you for working on the package.

The builds start at 5pm EST daily. If it's helpful, you can see which R
version, compilers and compiler flags are used for each build machine by
clicking the name at the top left of the report:



On 04/20/2017 12:38 AM, Janssen-10, R.R.E. wrote:
> Dear Valerie,
> We're working on MutationalPatterns as you can see (we've had our last changes pushed into the SVN repository just two days ago).
> Due to the timezone differences between Europe and the US, we seem to be missing out the starting point of a new build round.
> So, at which time do you start a new build round?  We have the fixes in place to address the build issues.
> There seems to be a difference between the R setup on your build machines and ours, which leads to differences in the tests.  They all pass on our machines, so it's hard for us to debug this in a timely manner.
> Thanks!
> Kind regards,
> Roel Janssen
> ________________________________________
> From: Bioc-devel [bioc-devel-bounces at r-project.org] on behalf of Obenchain, Valerie [Valerie.Obenchain at RoswellPark.org]
> Sent: Wednesday, April 19, 2017 9:19 PM
> To: bioc-devel at r-project.org
> Subject: [Bioc-devel] Bioconductor 3.5 release: potential deprecations
> Hi,
> Due to errors / unresponsive maintainers this new group of packages has
> been identified for potential deprecation in Biocondcutor 3.5.
> anamiR
> FunChiP
> MutationalPatterns
> seqplots
> snm
> ssviz
> stepwiseCM
> ToPASeq
> If anyone is interested in taking over as maintainer please let us know.
> If not fixed by Friday, April 21, these will be deprecated in 3.5.
> Valerie
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