[Bioc-devel] Bioconductor 3.5 release: potential deprecations

[Janssen-10, R.R.E.]

Dear Valerie,

We're working on MutationalPatterns as you can see (we've had our last changes pushed into the SVN repository just two days ago).
Due to the timezone differences between Europe and the US, we seem to be missing out the starting point of a new build round.

So, at which time do you start a new build round?  We have the fixes in place to address the build issues.
There seems to be a difference between the R setup on your build machines and ours, which leads to differences in the tests.  They all pass on our machines, so it's hard for us to debug this in a timely manner.

Thanks!

Kind regards,
Roel Janssen

________________________________________
From: Bioc-devel [bioc-devel-bounces at r-project.org] on behalf of Obenchain, Valerie [Valerie.Obenchain at RoswellPark.org]
Sent: Wednesday, April 19, 2017 9:19 PM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] Bioconductor 3.5 release: potential deprecations

Hi,

Due to errors / unresponsive maintainers this new group of packages has
been identified for potential deprecation in Biocondcutor 3.5.

anamiR
FunChiP
MutationalPatterns
seqplots
snm
ssviz
stepwiseCM
ToPASeq

If anyone is interested in taking over as maintainer please let us know.
If not fixed by Friday, April 21, these will be deprecated in 3.5.

Valerie



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