[Bioc-devel] Installing EBImage with custom packages dir?

Shepherd, Lori Lori.Shepherd at RoswellPark.org
Tue Apr 11 14:32:06 CEST 2017

You can always use biocLite(pkg  , lib="path/to/library") .  The lib path in biocLite defaults to the .libPaths()[1].  When you do .libPaths() upon opening R does your path appear that you set with the environment variables?

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Guillaume MULLER <gm at presans.com>
Sent: Tuesday, April 11, 2017 8:28:34 AM
To: Shepherd, Lori; bioc-devel at r-project.org
Subject: Re: [Bioc-devel] Installing EBImage with custom packages dir?


Thanks for your answer.

The R_LIBS and R_LIBS_USER environment variables are already set in my ~/.Renviron . They point to the correct location. But this latter is not selected when installing packages with biocLite()...


Guillaume MULLER, PhD
PRESANS - Remix Coworking - L'Appart
57 rue de Turbigo
75003 Paris

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