[Bioc-devel] Change in the function getHPa( ) of the hpar package

Shepherd, Lori Lori.Shepherd at roswellpark.org
Thu Sep 29 16:53:15 CEST 2016


Please do not write your own function. We encourage utilizing existing functionality.

As long as you are using the development version of hpar, that will be the version that is used in the upcoming release.  Over the next few weeks I would recommend checking that you are using/testing with the most recent development version of that package.

Lori Shepherd

Bioconductor Core Team

Roswell Park Cancer Institute

Department of Biostatistics & Bioinformatics

Elm & Carlton Streets

Buffalo, New York 14263

From: Bioc-devel <bioc-devel-bounces at r-project.org> on behalf of Rodriguez Martinez, Andrea <andrea.rodriguez-martinez13 at imperial.ac.uk>
Sent: Thursday, September 29, 2016 10:24:31 AM
To: bioc-devel at r-project.org
Subject: [Bioc-devel] Change in the function getHPa( ) of the hpar package


I've just noticed that the function getHPa package has recently changed in the devel branch of the package, as follows:

# Old function (in the current release branch)

getHpa(id, hpadata = "NormalTissue")

#New function (in the current devel branch)

getHpa(id, hpadata = "hpaNormalTissue")

A function of my package (MetaboSignal) uses this function from the hpar package, so today I had to update my code according to this modification of the getHpa function. I just wanted to confirm that the next release version of hpar is going to keep this new version of the getHpa function. Otherwise, I guess this might cause trouble with the upcoming release version of MetaboSignal. Would it be worthy to write my own getHpa function to avoid this kind of problems ?

Thanks very much in advance,


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