[Bioc-devel] there is no package called 'zlibbioc' on WINDOWS

[Martin Morgan]

On 09/21/2016 06:06 AM, Moritz Gerstung wrote:
> Hi Dan
>
> Has this problem problem resurrected?
>
> I see many packages depending on zlibbioc fail, including gage, Rhtslib and deepSNV.
>
> http://bioconductor.org/checkResults/devel/bioc-LATEST/gage/moscato1-install.html

The situation has improved but is not fixed across the board. Once 
zlibbioc (or another package at the root of a large hierarchy) fails, 
then the build on windows looks terrible.

Martin

>
> Cheers
>
> Moritz
>
>
>> On 1 Jun 2016, at 20:40, Dan Tenenbaum <dtenenba at fredhutch.org> wrote:
>>
>> It's a problem on the server itself. It will not be present in today's build report which should be up in half an hour or so.
>>
>> This is an intermittent problem, not a continuous one.
>>
>> Dan
>>
>>
>> ----- Original Message -----
>>> From: "Hartley, Stephen (NIH/NHGRI) [F]" <stephen.hartley at nih.gov>
>>> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>, "Monther Alhamdoosh" <m.hamdoosh at gmail.com>, "bioc-devel"
>>> <bioc-devel at r-project.org>
>>> Sent: Wednesday, June 1, 2016 12:11:27 PM
>>> Subject: RE: [Bioc-devel] there is no package called 'zlibbioc' on WINDOWS
>>
>>> It looks like the zlibbioc package still won't load on moscato2. This is causing
>>> something a ton of packages to fail at build (almost half?).
>>>
>>> Does anyone have any idea what the issue is? Is it a problem with a patch to the
>>> zlibbioc package, or a problem on the server itself?
>>>
>>> -Steve
>>>
>>> -----Original Message-----
>>> From: Dan Tenenbaum [mailto:dtenenba at fredhutch.org]
>>> Sent: Thursday, May 26, 2016 9:03 PM
>>> To: Monther Alhamdoosh; bioc-devel at r-project.org
>>> Subject: Re: [Bioc-devel] there is no package called 'zlibbioc' on WINDOWS
>>>
>>> It's an as yet unknown problem with the build system. It's very likely that it
>>> will resolve itself in tonight's builds.
>>>
>>> Dan
>>>
>>>
>>> On May 26, 2016 5:04:43 PM PDT, Monther Alhamdoosh <m.hamdoosh at gmail.com> wrote:
>>>> Hi developers,
>>>>
>>>> Our package named EGSEA seems to fail to be built on Windows as it
>>>> depends on "gage" which depends on zlibbioc. The problem appears in the
>>>> release branch and not in the devel branch.
>>>>
>>>> Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck =
>>>> vI[[i]])
>>>> :
>>>>
>>>> there is no package called 'zlibbioc'
>>>>
>>>> ERROR: lazy loading failed for package 'gage'
>>>>
>>>> Cheers,
>>>> Monther
>>>>
>>>> 	[[alternative HTML version deleted]]
>>>>
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>>>
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>>>
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>
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