[Bioc-devel] [Bioc-degel] AnnotationHub needed in the description of the ExperimentHubData

Obenchain, Valerie Valerie.Obenchain at roswellpark.org
Wed Nov 30 20:27:32 CET 2016

There is a section in the vignette that describes what should be imported:


The package should depend on and fully import ExperimentHub.

ExperimentHub depends on AnnotationHub. When ExperimentHub is loaded you
can see AnnotationHub attached to the search path with search().
read.csv is imported in AnnotationHub so adding this dependency should
take care of all the warnings you mentioned.

Are you depending on ExpermentHub?


On 11/30/2016 09:52 AM, Marcin Kosiński wrote:
> Hi bioc devs!
> In this manual about creeating ExperimentHubData package
> http://www.bioconductor.org/packages/3.4/bioc/vignettes/ExperimentHubData/inst/doc/ExperimentHubData.html
> there is a suggestion to create a zzz.R file where `query` function is used.
> This function comes from AnnotationHub package, so there somewhere someone
> should add an information about adding AnnotationHub to Imports in
> DESCRIPTION and about importing query from AnnotationHub in NAMESPACE.
> Without that the CRAN CHECK results in `query is an undocumented object or
> function`. What is more, I even had to add importFrom(utils, read.csv) to
> the NAMESPACE, just from that reason :)
> Cheers!
> Marcin
> 	[[alternative HTML version deleted]]
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