[Bioc-devel] makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)

Marlin JL.M marlin- at gmx.cn
Sun Nov 13 11:25:23 CET 2016

Dear all,

When trying to import the the GTF file downloaded from iGenome using
makeTxDbFromGFF, I figured out that many genes are dropped silently,
probably because those genes happens to have multiple chromosome
locations in that GTF file. 

I have posted it at https://support.bioconductor.org/p/89401 with no
reply yet. As I find it somehow a problem-causing bug, I decide to send
the information here.

Is there any suggested way to deal with the case?

Best regards,

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