[Bioc-devel] lumi package is not available

[Martin Morgan]

On 11/09/2016 05:25 PM, James W. MacDonald wrote:
>
>
> On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan
> <martin.morgan at roswellpark.org <mailto:martin.morgan at roswellpark.org>>
> wrote:
>
>     I updated the code to remove the R CMD check error (svn revision
>     r123826) and to clean up miscellaneous NOTEs about formatting
>     (r123827). I ported these changes to release.
>
>     It is likely that the package has a number of other similar problems
>     (assigning exprs() with incompatible dimnames) so a thorough review
>     is required.
>
>     There are vignette products in the vignettes/ directory, but no Rnw
>     / Rmd files; this needs to be corrected.
>
>     If there is no-one willing to actively maintain this package, I
>     think that it should be deprecated in devel. This would impact a
>     number of packages that Depend, Import, or Suggest lumi.
>
>
> Pan Du has several packages. Is this an issue for all of those packages
> or just lumi?

I think that's a reasonable conclusion. Martin

>
> Jim
>
>
>
>
>     Martin
>
>     On 10/28/2016 06:47 AM, Gang Feng wrote:
>
>         Hi,
>
>         We are working on one issue in the lumi package. Sorry about this.
>
>         Gilbert
>
>         On 10/28/16 3:20 AM, "Bioc-devel on behalf of 王棣台"
>         <bioc-devel-bounces at r-project.org
>         <mailto:bioc-devel-bounces at r-project.org> on behalf of
>         r04945002 at ntu.edu.tw <mailto:r04945002 at ntu.edu.tw>> wrote:
>
>             Hi, all
>
>             I am the author of package "anamiR".
>             I got a Warning message "Warning: dependency ''lumi" is not
>             available"
>             when I installed anamiR.
>             Also, I tried other packages which depend on "lumi" package,
>             and all got
>             the same warning message.
>             Is there any way I can solve this problem?
>
>             Best regards,
>             T.Wang
>
>
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> James W. MacDonald, M.S.
> Biostatistician
> University of Washington
> Environmental and Occupational Health Sciences
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