[Bioc-devel] lumi package is not available

[James W. MacDonald]

On Wed, Nov 9, 2016 at 4:48 PM, Martin Morgan <martin.morgan at roswellpark.org
> wrote:

> I updated the code to remove the R CMD check error (svn revision r123826)
> and to clean up miscellaneous NOTEs about formatting (r123827). I ported
> these changes to release.
>
> It is likely that the package has a number of other similar problems
> (assigning exprs() with incompatible dimnames) so a thorough review is
> required.
>
> There are vignette products in the vignettes/ directory, but no Rnw / Rmd
> files; this needs to be corrected.
>
> If there is no-one willing to actively maintain this package, I think that
> it should be deprecated in devel. This would impact a number of packages
> that Depend, Import, or Suggest lumi.
>

Pan Du has several packages. Is this an issue for all of those packages or
just lumi?

Jim



>
> Martin
>
> On 10/28/2016 06:47 AM, Gang Feng wrote:
>
>> Hi,
>>
>> We are working on one issue in the lumi package. Sorry about this.
>>
>> Gilbert
>>
>> On 10/28/16 3:20 AM, "Bioc-devel on behalf of 王棣台"
>> <bioc-devel-bounces at r-project.org on behalf of r04945002 at ntu.edu.tw>
>> wrote:
>>
>> Hi, all
>>>
>>> I am the author of package "anamiR".
>>> I got a Warning message "Warning: dependency ''lumi" is not available"
>>> when I installed anamiR.
>>> Also, I tried other packages which depend on "lumi" package, and all got
>>> the same warning message.
>>> Is there any way I can solve this problem?
>>>
>>> Best regards,
>>> T.Wang
>>>
>>>
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-- 
James W. MacDonald, M.S.
Biostatistician
University of Washington
Environmental and Occupational Health Sciences
4225 Roosevelt Way NE, # 100
Seattle WA 98105-6099

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