[Bioc-devel] namespace question

[Michael Lawrence]

I can't find the hash function in IRanges. Are you sure it has one?

On Wed, Mar 30, 2016 at 8:07 PM, Zhu, Lihua (Julie)
<Julie.Zhu at umassmed.edu> wrote:
> Michael,
>
> I have the same user case as Kasper. Another example is that both IRanges
> and hash packages have hash. I need to use the hash from the hash package
> instead of the one from IRanges.
>
> Best,
>
> Julie
>
> On Mar 30, 2016, at 7:57 PM, Kasper Daniel Hansen
> <kasperdanielhansen at gmail.com> wrote:
>
> My usecase is when I import() two packages who has a conflict in a name.
> For example, both Biobase and matrixStats has both anyMissing and
> rowMedians. I am happy to get all of these two packages, but I need to
> resolve the conflict.  Since I want to keep the ones from matrixStats I know
> need to figure out how to import Biobase selectively.  Which I can, using
> the tools from codetoolsBioC, but I would also be happy with an
> importFromExcept(), which would make my life much easier.
>
> Best,
> Kasper
>
> On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence
> <lawrence.michael at gene.com> wrote:
>>
>> I'm curious about which symbols you wouldn't want to import, and why.
>>
>> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie)
>> <Julie.Zhu at umassmed.edu> wrote:
>> > Hi,
>> >
>> > Is there a function to import all the exported objects from a package
>> > except a few named ones in NAMESPACE file?
>> >
>> > For example, I would like to import all the functions in S4Vectors
>> > except fold. Is there a way to  specify this without listing all other
>> > functions using importFrom?
>> >
>> > Many thanks for your help!
>> >
>> > Best regards,
>> >
>> > Julie
>> >
>> > ********************************************
>> > Lihua Julie Zhu, Ph.D
>> > Research Professor
>> > Department of Molecular, Cell and Cancer Biology (MCCB)
>> > Head of MCCB Bioinformatics Core
>> > Program in Molecular Medicine
>> > Program in Bioinformatics and Integrative Biology
>> > University of Massachusetts Medical School
>> > 364 Plantation Street, Room 613
>> > Worcester, MA 01605
>> > 508-856-5256 phone
>> > (508) 856 5460 fax
>> >
>> > http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person=1134
>> >
>> >
>> >         [[alternative HTML version deleted]]
>> >
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>