[Bioc-devel] namespace question

[Kasper Daniel Hansen]

For this particular use case I think we might just make Biobase depend on
matrixStats and then go forward.

On Wed, Mar 30, 2016 at 8:22 PM, Michael Lawrence <lawrence.michael at gene.com
> wrote:

> Thanks. If we can identify specific conflicts between popular
> packages, we might be able to work around them. I think S4Vectors is
> coming to depend on matrixStats, so those conflicts will start
> happening a lot more often now.
>
> Michael
>
> On Wed, Mar 30, 2016 at 4:56 PM, Kasper Daniel Hansen
> <kasperdanielhansen at gmail.com> wrote:
> > My usecase is when I import() two packages who has a conflict in a name.
> > For example, both Biobase and matrixStats has both anyMissing and
> > rowMedians. I am happy to get all of these two packages, but I need to
> > resolve the conflict.  Since I want to keep the ones from matrixStats I
> know
> > need to figure out how to import Biobase selectively.  Which I can, using
> > the tools from codetoolsBioC, but I would also be happy with an
> > importFromExcept(), which would make my life much easier.
> >
> > Best,
> > Kasper
> >
> > On Wed, Mar 30, 2016 at 4:47 PM, Michael Lawrence
> > <lawrence.michael at gene.com> wrote:
> >>
> >> I'm curious about which symbols you wouldn't want to import, and why.
> >>
> >> On Wed, Mar 30, 2016 at 12:19 PM, Zhu, Lihua (Julie)
> >> <Julie.Zhu at umassmed.edu> wrote:
> >> > Hi,
> >> >
> >> > Is there a function to import all the exported objects from a package
> >> > except a few named ones in NAMESPACE file?
> >> >
> >> > For example, I would like to import all the functions in S4Vectors
> >> > except fold. Is there a way to  specify this without listing all other
> >> > functions using importFrom?
> >> >
> >> > Many thanks for your help!
> >> >
> >> > Best regards,
> >> >
> >> > Julie
> >> >
> >> > ********************************************
> >> > Lihua Julie Zhu, Ph.D
> >> > Research Professor
> >> > Department of Molecular, Cell and Cancer Biology (MCCB)
> >> > Head of MCCB Bioinformatics Core
> >> > Program in Molecular Medicine
> >> > Program in Bioinformatics and Integrative Biology
> >> > University of Massachusetts Medical School
> >> > 364 Plantation Street, Room 613
> >> > Worcester, MA 01605
> >> > 508-856-5256 phone
> >> > (508) 856 5460 fax
> >> >
> >> >
> http://profiles.umassmed.edu/profiles/ProfileDetails.aspx?From=SE&Person=1134
> >> >
> >> >
> >> >         [[alternative HTML version deleted]]
> >> >
> >> > _______________________________________________
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> >>
> >> _______________________________________________
> >> Bioc-devel at r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >
> >
>

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