[Bioc-devel] Issues uploading our updated package (CausalR)

[Glyn Bradley]

Hi,
We’ve got CausalR back up both in the 3.2 release and devel, but although we committed the same package (with different version number) to both release and devel, the landing pages are showing
build:OK in release but build:warnings in devel.

Does anyone know why this might be, and more importantly, would the build:warnings in devel affect the release of the package in v3.3?

Thanks,
Glyn

From: Glyn Bradley
Sent: 16 March 2016 13:22
To: 'Kasper Daniel Hansen'
Cc: bioc-devel at r-project.org
Subject: RE: [Bioc-devel] Issues uploading our updated package (CausalR)

Thanks, we’ve already read that.
I was more hoping for a response from the Bioconductor team
Glyn

From: Kasper Daniel Hansen [mailto:kasperdanielhansen at gmail.com]
Sent: 16 March 2016 13:20
To: Glyn Bradley
Cc: bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>
Subject: Re: [Bioc-devel] Issues uploading our updated package (CausalR)

I don't know much about deprecated packages and how to deal with them, but for your svn questions, start by reading the howto:

  https://www.bioconductor.org/developers/source-control/

Kasper

On Wed, Mar 16, 2016 at 6:19 AM, Glyn Bradley <glyn.x.bradley at gsk.com<mailto:glyn.x.bradley at gsk.com>> wrote:
Hi All,

Our package, CausalR, broke when igraph was updated last year. We have now fixed this, but are having problems uploading the
new version. The package had become depreciated in devel, but there's still a landing page in release.

We checked out the existing Bioconductor version (via SVN) to a local directory from
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR
The new, fixed, version was uploaded via SVN commit [Revision: 114806*] back to
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR

But if you open https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR in a web browser
it's still showing old data from Revision: 114827 (we don't understand why our new upload had a revision number lower
than this)

Also, because CausalR had become depreciated in devel, we were previously told we would have to update the package
in both the devel and release trunks, but we only have the one url
(https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/CausalR)
So separately to the issues above about our update not seeming to stay on the system, could someone please advise how we
update both trunks?

Many thanks. Feel free to email me directly if this isn't a suitable discussion for the mailing list.
Glyn




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