[Bioc-devel] ExperimentHub and existing data in AnnotationHub

[Obenchain, Valerie]

On 03/15/2016 04:05 PM, Laurent Gatto wrote:
> On 15 March 2016 21:45, Obenchain, Valerie wrote:
>
>> Hi Laurent,
>>
>> ExperimentHub won't be in the next release but will be active in the
>> next devel (Bioconductor 3.5). If you want to move your data from
>> AnnotationHub to ExperimentHub I can help with that but not until after
>> the release. We don't have a formal policy but it seems reasonable for
>> the 'more curated' datasets to be moved to ExperimentHub.
> The reason I bring this up is that I am slowly disseminating
> AnnotationHub as a way to obtain proteomics data (and plan to add more
> data soon). For example, I am supposed to finalise a book chapter by the
> end of the month where I have a section on obtaining MS/proteomics data
> that mentions AnnotationHub. If all data is to be added to ExperimentHub
> in the future, I think I should try to transition asap, before any
> publications come out that can't be changed later on. Although that will
> mean to the data to be available through devel only when the book
> chapter, for example, is published.

Given the time constraints I would stick with AnnotationHub. There is no
problem hosting the MS/proteomics data there.

>
> Will there be some cross-talk between EH and AH to assure some backwards
> compatibility?

We don't have plans to actively move data from AH to EH but could do it
if the author wanted to and if the data were appropriate. You bring up a
good point about backwards compatibility between the hubs. I don't think
it's a good idea to have both an 'AH' id and 'EH' id and maintain a
mapping between the two. While we are creating separate hubs for
management purposes the interfaces will be very similar. It shouldn't
matter much to the end user whether they get data from AH or EH.

Valerie
>
> Laurent
>
>> Valerie
>>
>>
>>
>> On 03/13/2016 12:27 PM, Laurent Gatto wrote:
>>> Dear all,
>>>
>>> Now that ExperimentHub is out, what is the policy regarding data that is
>>> currently in AnnotationHub? In particular, I am wondering if there is
>>> any action to be taken with ProteomicsAnnotationHubData, whose role is
>>> to disseminate MS/proteomics data via AnnotationHub.
>>>
>>> Best wishes,
>>>
>>> Laurent
>>>
>>>
>>
>>
>> This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.
>



This email message may contain legally privileged and/or confidential information.  If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited.  If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you.