[Bioc-devel] test coverage status unkown

[Ou, Jianhong]

Thank you a lot for your quick response, Jim. I deeply appreciate for your help.

Yours Sincerely,

Jianhong Ou

TEL: 508-856-5379
LRB 608
Bioinformatician of Bioinformatics core at
Department of Molecular, Cell and Cancer Biology
364 Plantation Street Worcester,
MA 01605

From: Jim Hester <james.f.hester at gmail.com<mailto:james.f.hester at gmail.com>>
Date: Monday, March 7, 2016 1:53 PM
To: Jianhong Ou <jianhong.ou at umassmed.edu<mailto:jianhong.ou at umassmed.edu>>
Cc: bioc-devel <bioc-devel at r-project.org<mailto:bioc-devel at r-project.org>>
Subject: Re: [Bioc-devel] test coverage status unkown

`covr::codecov()` _has_ to be run on a git repository unless both the commit and branch are given as arguments which is the cause of your error `Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128`.

The coverage of your package in both devel (http://bioconductor.org/packages/devel/bioc/html/ChIPpeakAnno.html) and release (http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html) looks to be properly populated now, so this must be fixed.

On Mon, Mar 7, 2016 at 9:34 AM, Ou, Jianhong <Jianhong.Ou at umassmed.edu<mailto:Jianhong.Ou at umassmed.edu>> wrote:
Hi,

The test coverage status for ChIPpeakAnno devel version is shown as unknown. I tried covr::package_coverage(clean=FALSE), it reports:
ChIPpeakAnno Test Coverage: 40.49%
However, when I try codecov()
I got error: Error: running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128

Could any one help me to fix this problem? Thanks a lot.

Yours Sincerely,

Jianhong Ou

TEL: 508-856-5379<tel:508-856-5379>
LRB 608
Bioinformatician of Bioinformatics core at
Department of Molecular, Cell and Cancer Biology
364 Plantation Street Worcester,
MA 01605

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