[Bioc-devel] test coverage status unkown

[Jim Hester]

`covr::codecov()` _has_ to be run on a git repository unless both the
commit and branch are given as arguments which is the cause of your
error `Error:
running command ''git' 'rev-parse' '--abbrev-ref' 'HEAD'' had status 128`.

The coverage of your package in both devel (
http://bioconductor.org/packages/devel/bioc/html/ChIPpeakAnno.html) and
release (
http://bioconductor.org/packages/release/bioc/html/ChIPpeakAnno.html) looks
to be properly populated now, so this must be fixed.

On Mon, Mar 7, 2016 at 9:34 AM, Ou, Jianhong <Jianhong.Ou at umassmed.edu>
wrote:

> Hi,
>
> The test coverage status for ChIPpeakAnno devel version is shown as
> unknown. I tried covr::package_coverage(clean=FALSE), it reports:
> ChIPpeakAnno Test Coverage: 40.49%
> However, when I try codecov()
> I got error: Error: running command ''git' 'rev-parse' '--abbrev-ref'
> 'HEAD'' had status 128
>
> Could any one help me to fix this problem? Thanks a lot.
>
> Yours Sincerely,
>
> Jianhong Ou
>
> TEL: 508-856-5379
> LRB 608
> Bioinformatician of Bioinformatics core at
> Department of Molecular, Cell and Cancer Biology
> 364 Plantation Street Worcester,
> MA 01605
>
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